Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-C5-A8XH-01A | TCGA-C5-A8XH | SDAD1|PARM1 | SDAD1 | PARM1 | 4 | 4 | -1 | 1 | 3 | 2 | 2 | 0.044 | 76911905 | 75937635 | tier1 | Out-of-frame | 15459 | NA | 0 |
| PRAD | TCGA-M7-A725-01A | TCGA-M7-A725 | BBS4|CSNK1G1 | BBS4 | CSNK1G1 | 15 | 15 | 1 | -1 | 50 | 18 | 16 | 0.059 | 73028307 | 64472653 | tier1 | In-frame | 1952 | NA | 0.37515 |
| SARC | TCGA-QC-AA9N-01A | TCGA-QC-AA9N | NRIP1|CSNK1G1 | NRIP1 | CSNK1G1 | 21 | 15 | -1 | -1 | 14 | 16 | 15 | 0.18 | 16415816 | 64508912 | tier1 | 5UTR-CDS | 11751 | NA | 0.37431 |
| STAD | TCGA-HU-A4HD-01A | TCGA-HU-A4HD | FAM96A|CSNK1G1 | FAM96A | CSNK1G1 | 15 | 15 | -1 | -1 | 2 | 12 | 10 | 3.9 | 64380886 | 64592922 | tier2 | CDS-5UTR | 6219 | NA | 0.37137 |
| GBM | TCGA-32-1970-01A | TCGA-32-1970 | JAZF1|CPT1C | JAZF1 | CPT1C | 7 | 19 | -1 | 1 | 6 | 22 | 14 | 1.1 | 28220082 | 50211980 | tier4 | Out-of-frame | 8487 | non-validated | 0.34853 |
| BRCA | TCGA-C8-A12V-01A | TCGA-C8-A12V | ARID1A|THBS3 | ARID1A | THBS3 | 1 | 1 | 1 | -1 | 40 | 38 | 34 | 0.96 | 27059283 | 155172928 | tier1 | In-frame | 1345 | NA | 0.37054 |
| LUSC | TCGA-43-7658-01A | TCGA-43-7658 | DYNC1I1|CXCL11 | DYNC1I1 | CXCL11 | 7 | 4 | 1 | -1 | 5 | 5 | 5 | 0.59 | 95709800 | 76957217 | tier1 | CDS-5UTR | 5211 | NA | 0.37214 |
| PRAD | TCGA-VP-A87K-01A | TCGA-VP-A87K | ZZZ3|CXCL11 | ZZZ3 | CXCL11 | 1 | 4 | -1 | -1 | 23 | 18 | 17 | 0.071 | 78148947 | 76957217 | tier1 | 5UTR-5UTR | 20728 | NA | 0 |
| BLCA | TCGA-DK-A3WY-01A | TCGA-DK-A3WY | PHLDB2|KCNAB1 | PHLDB2 | KCNAB1 | 3 | 3 | 1 | 1 | 2 | 4 | 4 | 0.073 | 111578423 | 156139405 | tier3 | 5UTR-CDS | 12756 | NA | 0.36135 |
| BRCA | TCGA-HN-A2NL-01A | TCGA-HN-A2NL | MLLT4|KCNAB1 | MLLT4 | KCNAB1 | 6 | 3 | 1 | 1 | 43 | 32 | 28 | 0.32 | 168227917 | 156232153 | tier1 | Out-of-frame | 10524 | NA | 0.38597 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | C3orf55|KCNAB1 | C3orf55 | KCNAB1 | 3 | 3 | 1 | 1 | 7 | 10 | 10 | 2.6 | 157271129 | 155836000 | tier1 | NA | 2715 | NA | 0 |
| LUAD | TCGA-55-A491-01A | TCGA-55-A491 | CPEB4|STK32A | CPEB4 | STK32A | 5 | 5 | 1 | 1 | 9 | 1 | 1 | 0.15 | 173380275 | 146750217 | tier3 | In-frame | 4119 | NA | 0.35736 |
| BRCA | TCGA-E2-A15A-06A | TCGA-E2-A15A | PPFIBP1|PDILT | PPFIBP1 | PDILT | 12 | 16 | 1 | -1 | 8 | 8 | 6 | 0.13 | 27731172 | 20381011 | tier1 | 5UTR-CDS | 13284 | NA | 0.36572 |
| BRCA | TCGA-A2-A0EV-01A | TCGA-A2-A0EV | ZNF460|ELSPBP1 | ZNF460 | ELSPBP1 | 19 | 19 | 1 | 1 | 183 | 118 | 111 | 1.7 | 57796045 | 48517428 | tier1 | In-frame | 20512 | NA | 0 |
| LGG | TCGA-DU-8166-01A | TCGA-DU-8166 | SYMPK|ELSPBP1 | SYMPK | ELSPBP1 | 19 | 19 | -1 | 1 | 2 | 2 | 2 | 1.9 | 46321217 | 48511908 | tier3 | CDS-5UTR | 17234 | NA | 0 |
| BRCA | TCGA-C8-A26Y-01A | TCGA-C8-A26Y | EIF2C2|PTK2 | EIF2C2 | PTK2 | 8 | 8 | -1 | -1 | 7 | 14 | 11 | 7.7 | 141645584 | 141678523 | tier1 | Out-of-frame | 5437 | NA | 0.38833 |
| BRCA | TCGA-E2-A1II-01A | TCGA-E2-A1II | EIF2C2|PTK2 | EIF2C2 | PTK2 | 8 | 8 | -1 | -1 | 2 | 4 | 3 | 7.7 | 141645584 | 141874498 | tier4 | Out-of-frame | 5438 | NA | 0.38833 |
| BRCA | TCGA-E2-A1LE-01A | TCGA-E2-A1LE | EIF2C2|PTK2 | EIF2C2 | PTK2 | 8 | 8 | -1 | -1 | 7 | 9 | 8 | 7.7 | 141645584 | 141696793 | tier1 | Out-of-frame | 5439 | NA | 0.38833 |
| HNSC | TCGA-CV-6953-01A | TCGA-CV-6953 | TRAPPC9|PTK2 | TRAPPC9 | PTK2 | 8 | 8 | -1 | -1 | 11 | 5 | 4 | 0.79 | 141415676 | 141696793 | tier1 | In-frame | 18585 | NA | 0 |
| LUAD | TCGA-38-6178-01A | TCGA-38-6178 | PTDSS1|PTK2 | PTDSS1 | PTK2 | 8 | 8 | 1 | -1 | 3 | 2 | 1 | 3.2 | 97321850 | 141840625 | tier3 | In-frame | 13752 | NA | 0.38533 |
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