Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCS | TCGA-NA-A4QY-01A | TCGA-NA-A4QY | PPP1R13B|ADAM18 | PPP1R13B | ADAM18 | 14 | 8 | -1 | 1 | 5 | 4 | 4 | 0.42 | 104313636 | 39463826 | tier1 | In-frame | 13363 | NA | 0.36847 |
| BRCA | TCGA-AN-A0FD-01A | TCGA-AN-A0FD | BCAS3|AXIN2 | BCAS3 | AXIN2 | 17 | 17 | 1 | -1 | 2 | 1 | 1 | 1.9 | 58885437 | 63554854 | tier2 | CDS-5UTR | 1974 | NA | 0.37275 |
| BRCA | TCGA-A1-A0SN-01A | TCGA-A1-A0SN | INTS2|AXIN2 | INTS2 | AXIN2 | 17 | 17 | -1 | -1 | 3 | 3 | 3 | 0.26 | 59989301 | 63554854 | tier2 | CDS-5UTR | 8261 | NA | 0.37136 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | CBFB|CA7 | CBFB | CA7 | 16 | 16 | 1 | 1 | 2 | 3 | 3 | 0.66 | 67100701 | 66880933 | tier2 | Out-of-frame | 3055 | NA | 0.35826 |
| SARC | TCGA-DX-AB2O-01A | TCGA-DX-AB2O | DPYSL2|FSTL5 | DPYSL2 | FSTL5 | 8 | 4 | 1 | -1 | 16 | 6 | 4 | 0.79 | 26441499 | 162508727 | tier1 | Out-of-frame | 5100 | NA | 0.37551 |
| SARC | TCGA-DX-AB2O-01A | TCGA-DX-AB2O | HMBOX1|FSTL5 | HMBOX1 | FSTL5 | 8 | 4 | 1 | -1 | 11 | 6 | 6 | 0.053 | 28837673 | 162508727 | tier1 | Out-of-frame | 7846 | NA | 0.35022 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | TTLL12|USP39 | TTLL12 | USP39 | 22 | 2 | -1 | 1 | 2 | 4 | 4 | 0.075 | 43564780 | 85872071 | tier2 | Out-of-frame | 18902 | NA | 0 |
| STAD | TCGA-VQ-A8E0-01A | TCGA-VQ-A8E0 | DGKD|INPP5D | DGKD | INPP5D | 2 | 2 | 1 | 1 | 3 | 77 | 67 | 1.1 | 234372929 | 234098496 | tier1 | In-frame | 4749 | NA | 0.38268 |
| UCS | TCGA-N8-A4PQ-01A | TCGA-N8-A4PQ | MKL1|INPP5D | MKL1 | INPP5D | 22 | 2 | -1 | 1 | 15 | 10 | 9 | 0.062 | 40948110 | 234077951 | tier1 | 5UTR-CDS | 10400 | NA | 0.38224 |
| LUAD | TCGA-91-6831-01A | TCGA-91-6831 | TTC33|GRM5 | TTC33 | GRM5 | 5 | 11 | -1 | -1 | 2 | 1 | 1 | 0.061 | 40755926 | 88242672 | tier2 | 5UTR-CDS | 18850 | NA | 0 |
| PRAD | TCGA-EJ-7115-01A | TCGA-EJ-7115 | TMEM135|GRM5 | TMEM135 | GRM5 | 11 | 11 | 1 | -1 | 2 | 1 | 1 | 1.1 | 87006865 | 88242672 | tier3 | In-frame | 17975 | NA | 0 |
| BLCA | TCGA-FJ-A3ZF-01A | TCGA-FJ-A3ZF | ZNF613|SIGLEC7 | ZNF613 | SIGLEC7 | 19 | 19 | 1 | 1 | 26 | 14 | 12 | 1.8 | 52433149 | 51656320 | tier1 | 5UTR-CDS | 20590 | NA | 0 |
| HNSC | TCGA-T2-A6X0-01A | TCGA-T2-A6X0 | DAPP1|COL4A3 | DAPP1 | COL4A3 | 4 | 2 | 1 | 1 | 6 | 4 | 3 | 0.85 | 100784229 | 228176502 | tier1 | Out-of-frame | 4554 | NA | 0.37758 |
| HNSC | TCGA-CV-7433-01A | TCGA-CV-7433 | MFF|COL4A3 | MFF | COL4A3 | 2 | 2 | 1 | 1 | 2 | 8 | 5 | 0.18 | 228193505 | 228147081 | tier2 | 5UTR-CDS | 10284 | NA | 0.36732 |
| LUAD | TCGA-44-A4SU-01A | TCGA-44-A4SU | KDM4C|KLK7 | KDM4C | KLK7 | 9 | 19 | 1 | -1 | 2 | 2 | 2 | 0.026 | 7049200 | 51480947 | tier2 | In-frame | 8685 | NA | 0.34378 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | FANCC|ROR2 | FANCC | ROR2 | 9 | 9 | -1 | -1 | 10 | 4 | 2 | 0.67 | 98002931 | 94538100 | tier1 | Out-of-frame | 6231 | NA | 0.3704 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | GALNT12|ROR2 | GALNT12 | ROR2 | 9 | 9 | 1 | -1 | 7 | 3 | 3 | 0.11 | 101570351 | 94325611 | tier1 | CDS-3UTR | 6922 | NA | 0.3662 |
| BRCA | TCGA-A8-A08I-01A | TCGA-A8-A08I | RG9MTD3|AR | RG9MTD3 | AR | 9 | X | 1 | 1 | 7 | 3 | 3 | 0.82 | 37776402 | 66905852 | tier1 | In-frame | 14623 | NA | 0 |
| CHOL | TCGA-ZH-A8Y4-01A | TCGA-ZH-A8Y4 | SHROOM4|AR | SHROOM4 | AR | X | X | -1 | 1 | 4 | 3 | 3 | 0.081 | 50438786 | 66905852 | tier1 | Out-of-frame | 15902 | NA | 0 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | RPL18|AR | RPL18 | AR | 19 | X | -1 | 1 | 2 | 133 | 50 | 0.39 | 49118588 | 66914515 | tier2 | 3UTR-CDS | 14978 | NA | 0 |
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