TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
OV	TCGA-24-1557-01A	TCGA-24-1557	RLF\|MFSD2A	RLF	MFSD2A	1	1	1	1	4	1	1	0.48	40627308	40424373	tier2	In-frame	14706	non-validated	0
SARC	TCGA-DX-A3U7-01A	TCGA-DX-A3U7	AGAP1\|ATG4B	AGAP1	ATG4B	2	2	1	1	15	8	4	0.72	236403493	242590425	tier4	In-frame	609	non-validated	0.36872
LUAD	TCGA-62-A46U-01A	TCGA-62-A46U	MTMR3\|SCNN1B	MTMR3	SCNN1B	22	16	1	1	13	8	6	0.82	30367051	23359913	tier1	CDS-5UTR	10827	NA	0.36306
PRAD	TCGA-KK-A8I7-01A	TCGA-KK-A8I7	MKL2\|SCNN1B	MKL2	SCNN1B	16	16	1	1	4	2	2	0.23	14312855	23364122	tier1	Out-of-frame	10418	NA	0.3706
SARC	TCGA-3B-A9I3-01A	TCGA-3B-A9I3	KIAA1949\|TNXB	KIAA1949	TNXB	6	6	-1	-1	11	3	2	0.051	30652185	32021488	tier1	Out-of-frame	8915	NA	0.36129
LUAD	TCGA-38-4626-01A	TCGA-38-4626	DHCR24\|SFTPC	DHCR24	SFTPC	1	8	-1	1	6	1	1	0.55	55317396	22019313	tier4	3UTR-5UTR	4778	NA	0.35741
LUSC	TCGA-98-A53C-01A	TCGA-98-A53C	DHCR24\|SFTPC	DHCR24	SFTPC	1	8	-1	1	2	1	1	0.55	55317396	22019313	tier4	3UTR-5UTR	4779	NA	0.35741
HNSC	TCGA-CV-6951-01A	TCGA-CV-6951	C11orf67\|SCGB1D1	C11orf67	SCGB1D1	11	11	1	1	2	6	5	100	77553674	61959528	tier2	Out-of-frame	2394	NA	0
OV	TCGA-24-2026-01A	TCGA-24-2026	TMEM179B\|SCGB1D1	TMEM179B	SCGB1D1	11	11	1	1	4	9	9	100	62554999	61959528	tier1	Out-of-frame	17992	NA	0
BRCA	TCGA-BH-A201-01A	TCGA-BH-A201	SYTL2\|CHRM1	SYTL2	CHRM1	11	11	-1	-1	250	124	119	2.3	85411558	62678650	tier1	CDS-5UTR	17281	NA	0
HNSC	TCGA-UF-A7JA-01A	TCGA-UF-A7JA	C4orf41\|ING2	C4orf41	ING2	4	4	1	1	3	4	4	0.67	184600639	184431435	tier1	Out-of-frame	2727	NA	0
SKCM	TCGA-EB-A3HV-01A	TCGA-EB-A3HV	CORO6\|SLC20A2	CORO6	SLC20A2	17	8	-1	-1	4	3	3	0.097	27945808	42275485	tier1	In-frame	4083	NA	0.35911
COAD	TCGA-G4-6317-02A	TCGA-G4-6317	EPB41L2\|STAT3	EPB41L2	STAT3	6	17	-1	-1	45	44	41	0.019	131384295	40474512	tier1	5UTR-CDS	5651	NA	0.38621
PRAD	TCGA-VP-A87C-01A	TCGA-VP-A87C	SREBF1\|STAT3	SREBF1	STAT3	17	17	-1	-1	54	35	33	0.21	17726832	40500557	tier1	CDS-5UTR	16828	NA	0
READ	TCGA-AG-3731-01A	TCGA-AG-3731	TBL1XR1\|STAT3	TBL1XR1	STAT3	3	17	-1	-1	85	111	106	1.4	176914909	40500557	tier1	5UTR-5UTR	17558	NA	0
BRCA	TCGA-B6-A0RE-01A	TCGA-B6-A0RE	TM2D2\|ADAM9	TM2D2	ADAM9	8	8	-1	1	6	9	9	0.13	38853732	38865405	tier1	Out-of-frame	17862	non-validated	0
BRCA	TCGA-B6-A0I1-01A	TCGA-B6-A0I1	WRN\|ADAM9	WRN	ADAM9	8	8	1	1	4	4	4	0.2	30982516	38871484	tier1	In-frame	19908	non-validated	0
PRAD	TCGA-EJ-5522-01A	TCGA-EJ-5522	AGPAT6\|ADAM9	AGPAT6	ADAM9	8	8	1	1	30	39	36	0.25	41456823	38899465	tier1	Out-of-frame	661	NA	0.37635
LUSC	TCGA-85-7843-01A	TCGA-85-7843	MED29\|ADAM18	MED29	ADAM18	19	8	1	1	25	11	11	0.002	39884277	39550119	tier1	In-frame	10226	NA	0.35757
SARC	TCGA-LI-A67I-01A	TCGA-LI-A67I	EIF4EBP1\|ADAM18	EIF4EBP1	ADAM18	8	8	1	1	2	3	2	100	37888236	39564309	tier3	Out-of-frame	5457	NA	0.36879

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