Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCS | TCGA-N7-A59B-01A | TCGA-N7-A59B | SP1|IGFBP6 | SP1 | IGFBP6 | 12 | 12 | 1 | 1 | 13 | 8 | 8 | 1.1 | 53777406 | 53494496 | tier1 | In-frame | 16632 | NA | 0 |
| SKCM | TCGA-RP-A695-06A | TCGA-RP-A695 | APBA2|SOAT2 | APBA2 | SOAT2 | 15 | 12 | 1 | 1 | 22 | 4 | 3 | 0.92 | 29288009 | 53512674 | tier1 | 5UTR-CDS | 1104 | NA | 0.36909 |
| OV | TCGA-61-1917-01A | TCGA-61-1917 | TMC6|TK1 | TMC6 | TK1 | 17 | 17 | -1 | -1 | 2 | 26 | 17 | 0.014 | 76124693 | 76171699 | tier2 | 5UTR-CDS | 17892 | NA | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | VMP1|TK1 | VMP1 | TK1 | 17 | 17 | 1 | -1 | 53 | 68 | 63 | 0.43 | 57785109 | 76171699 | tier1 | 5UTR-CDS | 19598 | NA | 0 |
| BRCA | TCGA-A8-A09I-01A | TCGA-A8-A09I | AXIN1|ITFG3 | AXIN1 | ITFG3 | 16 | 16 | -1 | 1 | 5 | 15 | 15 | 0.42 | 402369 | 299548 | tier1 | 5UTR-5UTR | 1833 | non-validated | 0.37465 |
| BRCA | TCGA-B6-A0RI-01A | TCGA-B6-A0RI | PARN|ABCA3 | PARN | ABCA3 | 16 | 16 | -1 | -1 | 2 | 3 | 3 | 0.058 | 14576495 | 2379855 | tier2 | CDS-5UTR | 12294 | NA | 0.35934 |
| UCS | TCGA-N6-A4VE-01A | TCGA-N6-A4VE | IFT140|ABCA3 | IFT140 | ABCA3 | 16 | 16 | -1 | -1 | 5 | 2 | 2 | 0.35 | 1657121 | 2369841 | tier1 | Out-of-frame | 8067 | NA | 0.35315 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | VPS37C|SLC3A2 | VPS37C | SLC3A2 | 11 | 11 | -1 | 1 | 31 | 57 | 47 | 3 | 60928863 | 62651929 | tier1 | 5UTR-CDS | 19647 | NA | 0 |
| SKCM | TCGA-D3-A1Q3-06A | TCGA-D3-A1Q3 | LYST|SLC3A2 | LYST | SLC3A2 | 1 | 11 | -1 | 1 | 2 | 49 | 33 | 0.33 | 236046487 | 62643221 | tier4 | 5UTR-CDS | 9713 | NA | 0.37063 |
| LUSC | TCGA-22-5473-01A | TCGA-22-5473 | SNX15|NAALADL1 | SNX15 | NAALADL1 | 11 | 11 | 1 | -1 | 4 | 1 | 1 | 0.19 | 64795108 | 64822210 | tier4 | In-frame | 16535 | NA | 0 |
| BRCA | TCGA-A8-A09R-01A | TCGA-A8-A09R | RHOBTB2|PNOC | RHOBTB2 | PNOC | 8 | 8 | 1 | 1 | 2 | 2 | 2 | 2.8 | 22868201 | 28196557 | tier2 | Out-of-frame | 14655 | NA | 0 |
| PRAD | TCGA-KK-A8I6-01A | TCGA-KK-A8I6 | KIF13B|PNOC | KIF13B | PNOC | 8 | 8 | -1 | 1 | 4 | 3 | 3 | 0.37 | 29023179 | 28186652 | tier4 | CDS-5UTR | 8942 | NA | 0.36848 |
| UCEC | TCGA-AJ-A3EM-01A | TCGA-AJ-A3EM | HMBOX1|PNOC | HMBOX1 | PNOC | 8 | 8 | 1 | 1 | 85 | 135 | 126 | 1.9 | 28748195 | 28186652 | tier1 | 5UTR-5UTR | 7848 | NA | 0.34547 |
| BLCA | TCGA-XF-AAMJ-01A | TCGA-XF-AAMJ | LARGE|KCNJ4 | LARGE | KCNJ4 | 22 | 22 | -1 | -1 | 2 | 2 | 1 | 0.027 | 34000421 | 38824176 | tier3 | CDS-5UTR | 9228 | NA | 0.35999 |
| ESCA | TCGA-R6-A6Y0-01B | TCGA-R6-A6Y0 | CYTH1|KCNJ4 | CYTH1 | KCNJ4 | 17 | 22 | -1 | -1 | 4 | 3 | 3 | 0.85 | 76778284 | 38824176 | tier1 | CDS-5UTR | 4510 | NA | 0.37313 |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | HPS5|SETD5 | HPS5 | SETD5 | 11 | 3 | -1 | 1 | 6 | 15 | 12 | 0.33 | 18318345 | 9466151 | tier1 | CDS-5UTR | 7957 | NA | 0.36116 |
| KIRC | TCGA-B0-5081-01A | TCGA-B0-5081 | TATDN2|SETD5 | TATDN2 | SETD5 | 3 | 3 | 1 | 1 | 3 | 1 | 1 | 0.38 | 10312699 | 9506109 | tier3 | Out-of-frame | 17431 | NA | 0 |
| LUAD | TCGA-L9-A8F4-01A | TCGA-L9-A8F4 | TBC1D5|SETD5 | TBC1D5 | SETD5 | 3 | 3 | -1 | 1 | 4 | 5 | 4 | 1.6 | 17469942 | 9477412 | tier2 | Out-of-frame | 17501 | NA | 0 |
| BRCA | TCGA-BH-A0BL-01A | TCGA-BH-A0BL | CGGBP1|SCN11A | CGGBP1 | SCN11A | 3 | 3 | -1 | -1 | 5 | 5 | 5 | 4.3 | 88190120 | 38968422 | tier1 | 5UTR-CDS | 3598 | NA | 0.34222 |
| KIRC | TCGA-EU-5906-01A | TCGA-EU-5906 | TRIT1|MFSD2A | TRIT1 | MFSD2A | 1 | 1 | -1 | 1 | 26 | 26 | 23 | 2 | 40348990 | 40422759 | tier4 | In-frame | 18697 | NA | 0 |
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