Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-K1-A42X-01A | TCGA-K1-A42X | AAGAB|SMAD3 | AAGAB | SMAD3 | 15 | 15 | -1 | 1 | 11 | 4 | 4 | 2.2 | 67500900 | 67457233 | tier1 | Out-of-frame | 7 | NA | 0.3763 |
| GBM | TCGA-06-0138-01A | TCGA-06-0138 | YEATS4|MARS | YEATS4 | MARS | 12 | 12 | 1 | 1 | 31 | 114 | 99 | 0.51 | 69764755 | 57905481 | tier1 | Out-of-frame | 20030 | NA | 0 |
| SKCM | TCGA-WE-A8K1-06A | TCGA-WE-A8K1 | GLE1|SLC27A4 | GLE1 | SLC27A4 | 9 | 9 | 1 | 1 | 11 | 13 | 11 | 0.33 | 131271376 | 131117677 | tier1 | Out-of-frame | 7092 | NA | 0.35555 |
| BRCA | TCGA-A7-A26F-01A | TCGA-A7-A26F | ROD1|ENDOG | ROD1 | ENDOG | 9 | 9 | -1 | 1 | 15 | 5 | 4 | 0.3 | 115095750 | 131583018 | tier1 | 5UTR-CDS | 14898 | NA | 0 |
| BLCA | TCGA-2F-A9KW-01A | TCGA-2F-A9KW | CDS1|UGT1A6 | CDS1 | UGT1A6 | 4 | 2 | 1 | 1 | 39 | 1 | 1 | 0.11 | 85530678 | 234602445 | tier2 | CDS-5UTR | 3479 | NA | 0.34061 |
| BRCA | TCGA-BH-A0B1-01A | TCGA-BH-A0B1 | ZNF423|NOD2 | ZNF423 | NOD2 | 16 | 16 | -1 | 1 | 4 | 1 | 1 | 0.77 | 49764682 | 50733399 | tier3 | In-frame | 20495 | NA | 0 |
| KIRC | TCGA-B8-A54K-01A | TCGA-B8-A54K | MYO18A|IGF2 | MYO18A | IGF2 | 17 | 11 | -1 | -1 | 2 | 1 | 1 | 0.12 | 27421031 | 2170575 | tier4 | NA | 10951 | NA | 0.36845 |
| BLCA | TCGA-G2-AA3B-01A | TCGA-G2-AA3B | RAPGEFL1|CDK12 | RAPGEFL1 | CDK12 | 17 | 17 | 1 | 1 | 2 | 2 | 2 | 0.027 | 38334633 | 37686884 | tier2 | In-frame | 14303 | NA | 0 |
| LUAD | TCGA-95-7947-01A | TCGA-95-7947 | MED1|CDK12 | MED1 | CDK12 | 17 | 17 | -1 | 1 | 167 | 261 | 215 | 1.7 | 37607291 | 37627132 | tier1 | Out-of-frame | 10150 | NA | 0.35216 |
| PCPG | TCGA-SR-A6MP-01A | TCGA-SR-A6MP | USP33|CDK12 | USP33 | CDK12 | 1 | 17 | -1 | 1 | 5 | 2 | 2 | 1.3 | 78225328 | 37627132 | tier1 | 5UTR-CDS | 19356 | NA | 0 |
| PRAD | TCGA-YJ-A8SW-01A | TCGA-YJ-A8SW | NSRP1|CDK12 | NSRP1 | CDK12 | 17 | 17 | 1 | 1 | 17 | 15 | 14 | 0.21 | 28445191 | 37646810 | tier1 | Out-of-frame | 11808 | NA | 0 |
| STAD | TCGA-BR-4366-01A | TCGA-BR-4366 | CASC3|CDK12 | CASC3 | CDK12 | 17 | 17 | 1 | 1 | 10 | 10 | 9 | 0.12 | 38297860 | 37686884 | tier1 | Out-of-frame | 3003 | NA | 0.34002 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | GRB7|CDK12 | GRB7 | CDK12 | 17 | 17 | 1 | 1 | 20 | 11 | 11 | 0.054 | 37902455 | 37680927 | tier1 | Out-of-frame | 7414 | NA | 0.37831 |
| UCEC | TCGA-KP-A3W4-01A | TCGA-KP-A3W4 | TMLHE|CDK12 | TMLHE | CDK12 | X | 17 | -1 | 1 | 2 | 1 | 1 | 0.83 | 154842453 | 37646810 | tier2 | 5UTR-CDS | 18073 | NA | 0 |
| BLCA | TCGA-G2-AA3F-01A | TCGA-G2-AA3F | GOLGA4|RRM1 | GOLGA4 | RRM1 | 3 | 11 | 1 | 1 | 39 | 31 | 31 | 0.07 | 37292975 | 4150304 | tier1 | In-frame | 7267 | NA | 0.36152 |
| PRAD | TCGA-V1-A9ZK-01A | TCGA-V1-A9ZK | BZW2|RRM1 | BZW2 | RRM1 | 7 | 11 | 1 | 1 | 2 | 1 | 1 | 2.5 | 16685913 | 4127276 | tier3 | 5UTR-CDS | 2294 | NA | 0.36356 |
| BRCA | TCGA-BH-A0DG-01A | TCGA-BH-A0DG | SRP68|LPO | SRP68 | LPO | 17 | 17 | -1 | 1 | 53 | 25 | 23 | 0.27 | 74036500 | 56327776 | tier1 | In-frame | 16859 | validated | 0 |
| BLCA | TCGA-DK-A1A5-01A | TCGA-DK-A1A5 | COIL|CA4 | COIL | CA4 | 17 | 17 | -1 | 1 | 10 | 6 | 6 | 0.37 | 55038136 | 58232675 | tier1 | Out-of-frame | 3985 | non-validated | 0.36683 |
| UCEC | TCGA-AX-A3G4-01A | TCGA-AX-A3G4 | TAX1BP1|GPX4 | TAX1BP1 | GPX4 | 7 | 19 | 1 | 1 | 35 | 19 | 16 | 1.1 | 27779888 | 1105185 | tier1 | 5UTR-CDS | 17434 | NA | 0 |
| GBM | TCGA-06-0211-01B | TCGA-06-0211 | CRTC1|KLHL26 | CRTC1 | KLHL26 | 19 | 19 | 1 | 1 | 10 | 16 | 12 | 0.22 | 18794638 | 18775071 | tier1 | Out-of-frame | 4243 | non-validated | 0.3653 |
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