Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-7123-01A | TCGA-EJ-7123 | NCL|STAT6 | NCL | STAT6 | 2 | 12 | -1 | -1 | 2 | 11 | 6 | 0.58 | 232319462 | 57496773 | tier3 | NA | 11177 | NA | 0.38096 |
| STAD | TCGA-BR-8687-01A | TCGA-BR-8687 | MYL6|STAT6 | MYL6 | STAT6 | 12 | 12 | 1 | -1 | 2 | 22 | 11 | 0.059 | 56555358 | 57496773 | tier2 | NA | 10926 | NA | 0.37763 |
| STAD | TCGA-BR-8687-01A | TCGA-BR-8687 | PRPF6|STAT6 | PRPF6 | STAT6 | 20 | 12 | 1 | -1 | 2 | 13 | 1 | 0.44 | 62664449 | 57496773 | tier3 | NA | 13608 | NA | 0.37569 |
| UCEC | TCGA-AJ-A3EK-01A | TCGA-AJ-A3EK | ACTG1|STAT6 | ACTG1 | STAT6 | 17 | 12 | -1 | -1 | 2 | 24 | 14 | 0.96 | 79476999 | 57496773 | tier4 | NA | 363 | NA | 0.37837 |
| GBM | TCGA-02-2485-01A | TCGA-02-2485 | R3HDM2|XRCC6BP1 | R3HDM2 | XRCC6BP1 | 12 | 12 | -1 | 1 | 4 | 8 | 7 | 0.016 | 57660514 | 58339411 | tier1 | In-frame | 14033 | non-validated | 0 |
| GBM | TCGA-06-0138-01A | TCGA-06-0138 | YEATS4|XRCC6BP1 | YEATS4 | XRCC6BP1 | 12 | 12 | 1 | 1 | 266 | 732 | 642 | 0.76 | 69764755 | 58339411 | tier1 | In-frame | 20032 | NA | 0 |
| LUSC | TCGA-43-8115-01A | TCGA-43-8115 | PPP1R12A|XRCC6BP1 | PPP1R12A | XRCC6BP1 | 12 | 12 | -1 | 1 | 14 | 5 | 4 | 0.88 | 80239082 | 58339411 | tier1 | In-frame | 13354 | NA | 0.37709 |
| PRAD | TCGA-J4-A67L-01A | TCGA-J4-A67L | DLGAP1|XRCC6BP1 | DLGAP1 | XRCC6BP1 | 18 | 12 | -1 | 1 | 3 | 4 | 4 | 0.95 | 3729135 | 58350470 | tier1 | Out-of-frame | 4894 | NA | 0.36241 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | CADPS2|XRCC6BP1 | CADPS2 | XRCC6BP1 | 7 | 12 | -1 | 1 | 109 | 87 | 76 | 3.3 | 122526053 | 58345541 | tier2 | In-frame | 2896 | NA | 0.36018 |
| SARC | TCGA-DX-AB2H-01A | TCGA-DX-AB2H | DLG2|XRCC6BP1 | DLG2 | XRCC6BP1 | 11 | 12 | -1 | 1 | 15 | 15 | 13 | 4.2 | 83874504 | 58339411 | tier1 | Out-of-frame | 4881 | NA | 0.37894 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | UHRF1BP1L|XRCC6BP1 | UHRF1BP1L | XRCC6BP1 | 12 | 12 | -1 | 1 | 3 | 4 | 4 | 2.8 | 100536370 | 58345541 | tier1 | Out-of-frame | 19214 | NA | 0 |
| BRCA | TCGA-E2-A9RU-01A | TCGA-E2-A9RU | MON2|PIP4K2C | MON2 | PIP4K2C | 12 | 12 | 1 | 1 | 20 | 26 | 26 | 0.007 | 62943610 | 57989671 | tier1 | In-frame | 10572 | NA | 0.35389 |
| GBM | TCGA-06-0174-01A | TCGA-06-0174 | R3HDM2|PIP4K2C | R3HDM2 | PIP4K2C | 12 | 12 | -1 | 1 | 75 | 345 | 303 | 1.6 | 57689182 | 57989671 | tier1 | In-frame | 14027 | NA | 0 |
| LUAD | TCGA-55-7907-01A | TCGA-55-7907 | FRS2|PIP4K2C | FRS2 | PIP4K2C | 12 | 12 | 1 | 1 | 20 | 24 | 14 | 2.5 | 69962876 | 57994107 | tier1 | In-frame | 6774 | NA | 0.37598 |
| SARC | TCGA-DX-AB3A-01A | TCGA-DX-AB3A | GRB10|PIP4K2C | GRB10 | PIP4K2C | 7 | 12 | -1 | 1 | 8 | 8 | 7 | 0.004 | 50737419 | 57987808 | tier1 | In-frame | 7405 | NA | 0.37352 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | SAMM50|PIP4K2C | SAMM50 | PIP4K2C | 22 | 12 | 1 | 1 | 6 | 6 | 6 | 0.62 | 44360433 | 57987808 | tier1 | In-frame | 15303 | NA | 0 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | SRI|PIP4K2C | SRI | PIP4K2C | 7 | 12 | -1 | 1 | 236 | 308 | 272 | 0.73 | 87840197 | 57987808 | tier1 | In-frame | 16854 | NA | 0 |
| SKCM | TCGA-EE-A2GB-06A | TCGA-EE-A2GB | METTL21B|PIP4K2C | METTL21B | PIP4K2C | 12 | 12 | 1 | 1 | 17 | 9 | 8 | 3.5 | 58166911 | 57987808 | tier1 | Out-of-frame | 10274 | NA | 0.34052 |
| BRCA | TCGA-EW-A1PB-01A | TCGA-EW-A1PB | ZNF385B|SCG5 | ZNF385B | SCG5 | 2 | 15 | -1 | 1 | 47 | 23 | 20 | 0.14 | 180634230 | 32935787 | tier1 | CDS-5UTR | 20481 | non-validated | 0 |
| SKCM | TCGA-EB-A57M-01A | TCGA-EB-A57M | SNX1|SCG5 | SNX1 | SCG5 | 15 | 15 | 1 | 1 | 3 | 2 | 2 | 1.3 | 64429131 | 32971967 | tier1 | Out-of-frame | 16525 | NA | 0 |
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