Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| ESCA | TCGA-R6-A6XG-01B | TCGA-R6-A6XG | KIF22|PRKCB | KIF22 | PRKCB | 16 | 16 | 1 | 1 | 18 | 29 | 24 | 2.5 | 29802150 | 24043457 | tier1 | Out-of-frame | 8979 | NA | 0.38596 |
| GBM | TCGA-06-0882-01A | TCGA-06-0882 | TNRC6A|PRKCB | TNRC6A | PRKCB | 16 | 16 | 1 | 1 | 2 | 1 | 1 | 0.69 | 24741621 | 24192111 | tier4 | In-frame | 18387 | NA | 0 |
| LGG | TCGA-HT-A5RC-01A | TCGA-HT-A5RC | GGA2|PRKCB | GGA2 | PRKCB | 16 | 16 | -1 | 1 | 23 | 7 | 7 | 0.04 | 23502998 | 23999829 | tier1 | In-frame | 7047 | NA | 0.38513 |
| SKCM | TCGA-D3-A3CC-06A | TCGA-D3-A3CC | C12orf35|A2ML1 | C12orf35 | A2ML1 | 12 | 12 | 1 | 1 | 36 | 64 | 58 | 1.2 | 32113805 | 9004380 | tier1 | 5UTR-CDS | 2416 | NA | 0 |
| PRAD | TCGA-EJ-A65B-01A | TCGA-EJ-A65B | FIP1L1|SLC38A8 | FIP1L1 | SLC38A8 | 4 | 16 | 1 | -1 | 91 | 83 | 77 | 0.41 | 54306775 | 84046657 | tier1 | In-frame | 6544 | NA | 0.33915 |
| COAD | TCGA-CK-6751-01A | TCGA-CK-6751 | TSPAN8|HSP90B1 | TSPAN8 | HSP90B1 | 12 | 12 | -1 | 1 | 2 | 43 | 6 | 1.9 | 71518880 | 104333287 | tier3 | 3UTR-CDS | 18805 | NA | 0 |
| BRCA | TCGA-AC-A6IV-01A | TCGA-AC-A6IV | RNF40|PLK1 | RNF40 | PLK1 | 16 | 16 | 1 | 1 | 10 | 11 | 10 | 0.035 | 30783511 | 23698790 | tier1 | Out-of-frame | 14842 | NA | 0 |
| BRCA | TCGA-A2-A0YM-01A | TCGA-A2-A0YM | MYH9|CACNG2 | MYH9 | CACNG2 | 22 | 22 | -1 | -1 | 38 | 21 | 20 | 0.015 | 36722613 | 36962540 | tier1 | Out-of-frame | 10899 | NA | 0.38129 |
| BRCA | TCGA-BH-A0BW-01A | TCGA-BH-A0BW | MYH9|CACNG2 | MYH9 | CACNG2 | 22 | 22 | -1 | -1 | 148 | 117 | 108 | 0.015 | 36783852 | 36962540 | tier1 | 5UTR-CDS | 10900 | non-validated | 0.38129 |
| LUAD | TCGA-44-A4SS-01A | TCGA-44-A4SS | MYH9|CACNG2 | MYH9 | CACNG2 | 22 | 22 | -1 | -1 | 26 | 9 | 9 | 0.015 | 36783852 | 36983595 | tier1 | 5UTR-CDS | 10898 | NA | 0.38129 |
| OV | TCGA-24-2026-01A | TCGA-24-2026 | MYH9|CACNG2 | MYH9 | CACNG2 | 22 | 22 | -1 | -1 | 4 | 22 | 20 | 0.015 | 36705327 | 36983595 | tier1 | In-frame | 10897 | NA | 0.38129 |
| ACC | TCGA-OR-A5K1-01A | TCGA-OR-A5K1 | GJA1|STAT6 | GJA1 | STAT6 | 6 | 12 | 1 | -1 | 2 | 10 | 8 | 0.12 | 121770873 | 57496773 | tier3 | NA | 7077 | NA | 0.37965 |
| CESC | TCGA-EA-A5ZE-01A | TCGA-EA-A5ZE | CCT3|STAT6 | CCT3 | STAT6 | 1 | 12 | -1 | -1 | 2 | 27 | 25 | 3.8 | 156278760 | 57496773 | tier3 | NA | 3255 | NA | 0.37795 |
| CESC | TCGA-FU-A5XV-01A | TCGA-FU-A5XV | KRT13|STAT6 | KRT13 | STAT6 | 17 | 12 | -1 | -1 | 2 | 75 | 62 | 0.07 | 39657233 | 57496773 | tier4 | NA | 9125 | NA | 0.37336 |
| CESC | TCGA-HM-A4S6-01A | TCGA-HM-A4S6 | KRT6A|STAT6 | KRT6A | STAT6 | 12 | 12 | -1 | -1 | 2 | 19 | 10 | 0.33 | 52880958 | 57496773 | tier3 | NA | 9161 | NA | 0.37692 |
| CESC | TCGA-JW-A5VJ-01A | TCGA-JW-A5VJ | NDRG1|STAT6 | NDRG1 | STAT6 | 8 | 12 | -1 | -1 | 2 | 82 | 52 | 1.9 | 134249419 | 57496773 | tier4 | NA | 11284 | NA | 0.37197 |
| COAD | TCGA-G4-6586-01A | TCGA-G4-6586 | ACTG1|STAT6 | ACTG1 | STAT6 | 17 | 12 | -1 | -1 | 2 | 52 | 24 | 0.96 | 79476999 | 57496773 | tier3 | NA | 364 | NA | 0.37837 |
| LIHC | TCGA-CC-A5UD-01A | TCGA-CC-A5UD | BAAT|STAT6 | BAAT | STAT6 | 9 | 12 | -1 | -1 | 2 | 4 | 1 | 1.7 | 104122699 | 57496773 | tier3 | NA | 1888 | NA | 0.37153 |
| MESO | TCGA-SH-A7BH-01A | TCGA-SH-A7BH | NAB2|STAT6 | NAB2 | STAT6 | 12 | 12 | 1 | -1 | 6 | 4 | 4 | 2e-31 | 57487381 | 57493223 | tier1 | In-frame | 11062 | NA | 0.37092 |
| PRAD | TCGA-YL-A8SB-01A | TCGA-YL-A8SB | HDLBP|STAT6 | HDLBP | STAT6 | 2 | 12 | -1 | -1 | 2 | 31 | 7 | 0.26 | 242168639 | 57496773 | tier3 | NA | 7654 | NA | 0.37481 |
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