Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-IR-A3LK-01A | TCGA-IR-A3LK | CASC5|LIPC | CASC5 | LIPC | 15 | 15 | 1 | 1 | 344 | 39 | 35 | 3.5 | 40886590 | 58855704 | tier2 | 5UTR-CDS | 3012 | NA | 0.35781 |
| PCPG | TCGA-QT-A5XN-01A | TCGA-QT-A5XN | FSIP1|GPR176 | FSIP1 | GPR176 | 15 | 15 | -1 | -1 | 3 | 1 | 1 | 1.6 | 39909936 | 40099459 | tier2 | In-frame | 6810 | NA | 0.35734 |
| SKCM | TCGA-EB-A550-01A | TCGA-EB-A550 | EHD4|GPR176 | EHD4 | GPR176 | 15 | 15 | -1 | -1 | 4 | 2 | 2 | 0.053 | 42264457 | 40099459 | tier1 | Out-of-frame | 5405 | NA | 0.35787 |
| STAD | TCGA-CG-4444-01A | TCGA-CG-4444 | MYO1E|GPR176 | MYO1E | GPR176 | 15 | 15 | -1 | -1 | 47 | 65 | 58 | 0.062 | 59510090 | 40099459 | tier1 | Out-of-frame | 10983 | NA | 0.36093 |
| PRAD | TCGA-EJ-7783-01A | TCGA-EJ-7783 | LEO1|FBN1 | LEO1 | FBN1 | 15 | 15 | -1 | -1 | 9 | 4 | 4 | 0.075 | 52263885 | 48830005 | tier1 | In-frame | 9295 | NA | 0.37243 |
| BLCA | TCGA-DK-AA76-01A | TCGA-DK-AA76 | MSI2|BRD7 | MSI2 | BRD7 | 17 | 16 | 1 | -1 | 4 | 3 | 1 | 0.17 | 55607085 | 50355949 | tier2 | Out-of-frame | 10711 | NA | 0.3664 |
| HNSC | TCGA-UF-A7JK-01A | TCGA-UF-A7JK | ARIH1|SENP8 | ARIH1 | SENP8 | 15 | 15 | 1 | 1 | 6 | 7 | 6 | 1.4 | 72847704 | 72431918 | tier1 | CDS-5UTR | 1387 | NA | 0.36051 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | APBA2|GABRB3 | APBA2 | GABRB3 | 15 | 15 | 1 | -1 | 5 | 4 | 4 | 2.7 | 29288009 | 26828561 | tier1 | 5UTR-CDS | 1101 | non-validated | 0.37274 |
| SARC | TCGA-UE-A6QU-01A | TCGA-UE-A6QU | GNL3L|GABRB3 | GNL3L | GABRB3 | X | 15 | 1 | -1 | 65 | 23 | 18 | 0.14 | 54559018 | 26828561 | tier1 | Out-of-frame | 7244 | NA | 0.3677 |
| BRCA | TCGA-AR-A24K-01A | TCGA-AR-A24K | PLEKHA7|SMPD1 | PLEKHA7 | SMPD1 | 11 | 11 | -1 | 1 | 4 | 9 | 9 | 0.034 | 17035536 | 6414446 | tier1 | In-frame | 13012 | NA | 0.35165 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | BCL3|ATP9B | BCL3 | ATP9B | 19 | 18 | 1 | 1 | 2 | 7 | 7 | 0.09 | 45251385 | 77013381 | tier2 | Out-of-frame | 2033 | NA | 0.37502 |
| LGG | TCGA-E1-A7YL-01A | TCGA-E1-A7YL | ZSCAN18|ATP9B | ZSCAN18 | ATP9B | 19 | 18 | -1 | 1 | 20 | 4 | 4 | 1.6 | 58609482 | 77063604 | tier1 | 5UTR-CDS | 20711 | NA | 0 |
| BRCA | TCGA-A2-A3XW-01A | TCGA-A2-A3XW | SIX1|CYB5R2 | SIX1 | CYB5R2 | 14 | 11 | -1 | -1 | 3 | 11 | 8 | 0.56 | 61115348 | 7689792 | tier1 | Out-of-frame | 15964 | NA | 0 |
| CESC | TCGA-C5-A1MK-01A | TCGA-C5-A1MK | GON4L|SERPINB7 | GON4L | SERPINB7 | 1 | 18 | -1 | 1 | 4 | 4 | 4 | 0.17 | 155783425 | 61449589 | tier1 | CDS-5UTR | 7297 | NA | 0.34796 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | CMIP|CDYL2 | CMIP | CDYL2 | 16 | 16 | 1 | -1 | 6 | 2 | 2 | 0.35 | 81479146 | 80719026 | tier1 | In-frame | 3887 | NA | 0.35504 |
| PRAD | TCGA-CH-5771-01A | TCGA-CH-5771 | SERINC5|CDYL2 | SERINC5 | CDYL2 | 5 | 16 | -1 | -1 | 2 | 5 | 4 | 0.15 | 79551715 | 80719026 | tier2 | In-frame | 15640 | non-validated | 0 |
| BRCA | TCGA-E9-A1N8-01A | TCGA-E9-A1N8 | HEATR6|WEE1 | HEATR6 | WEE1 | 17 | 11 | -1 | 1 | 3 | 5 | 5 | 0.45 | 58149576 | 9603079 | tier1 | Out-of-frame | 7667 | NA | 0.38355 |
| HNSC | TCGA-DQ-5630-01A | TCGA-DQ-5630 | SWAP70|WEE1 | SWAP70 | WEE1 | 11 | 11 | 1 | 1 | 5 | 3 | 3 | 1.9 | 9715833 | 9603079 | tier1 | Out-of-frame | 17222 | NA | 0 |
| LUAD | TCGA-05-4427-01A | TCGA-05-4427 | SWAP70|WEE1 | SWAP70 | WEE1 | 11 | 11 | 1 | 1 | 55 | 18 | 17 | 1.9 | 9685825 | 9597435 | tier1 | In-frame | 17221 | NA | 0 |
| BLCA | TCGA-4Z-AA7M-01A | TCGA-4Z-AA7M | USP31|PRKCB | USP31 | PRKCB | 16 | 16 | -1 | 1 | 8 | 11 | 11 | 0.87 | 23159959 | 23999829 | tier1 | Out-of-frame | 19348 | NA | 0 |
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