Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-FS-A1YY-06A | TCGA-FS-A1YY | ACACB|UNG | ACACB | UNG | 12 | 12 | 1 | 1 | 23 | 14 | 12 | 0.2 | 109665294 | 109547634 | tier1 | Out-of-frame | 243 | NA | 0.35764 |
| PAAD | TCGA-LB-A7SX-01A | TCGA-LB-A7SX | ICAM3|TYK2 | ICAM3 | TYK2 | 19 | 19 | -1 | -1 | 3 | 7 | 7 | 0.27 | 10445204 | 10468814 | tier1 | Out-of-frame | 8047 | NA | 0.37735 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | GPC4|GPC3 | GPC4 | GPC3 | X | X | -1 | -1 | 31 | 32 | 31 | 0.003 | 132548834 | 132670321 | tier1 | In-frame | 7327 | NA | 0.36085 |
| TGCT | TCGA-2G-AAKD-01A | TCGA-2G-AAKD | GPC4|GPC3 | GPC4 | GPC3 | X | X | -1 | -1 | 21 | 15 | 15 | 0.003 | 132548834 | 132670321 | tier1 | In-frame | 7326 | NA | 0.36085 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | MAP2K7|SH3GL1 | MAP2K7 | SH3GL1 | 19 | 19 | 1 | -1 | 36 | 17 | 16 | 0.025 | 7968953 | 4361793 | tier1 | In-frame | 9847 | validated | 0.38382 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | RARB|PRDM8 | RARB | PRDM8 | 3 | 4 | 1 | 1 | 5 | 1 | 1 | 0.45 | 25216066 | 81112626 | tier2 | CDS-5UTR | 14342 | NA | 0 |
| PRAD | TCGA-EJ-5501-01A | TCGA-EJ-5501 | RARB|FAM19A4 | RARB | FAM19A4 | 3 | 3 | 1 | -1 | 2 | 2 | 1 | 0.072 | 25542814 | 68802169 | tier2 | In-frame | 14340 | NA | 0 |
| SKCM | TCGA-GF-A6C9-06A | TCGA-GF-A6C9 | RARB|OSBPL10 | RARB | OSBPL10 | 3 | 3 | 1 | -1 | 5 | 3 | 3 | 0.02 | 25216066 | 31921322 | tier1 | Out-of-frame | 14341 | NA | 0 |
| BLCA | TCGA-DK-A6B2-01A | TCGA-DK-A6B2 | TOP2B|NGLY1 | TOP2B | NGLY1 | 3 | 3 | -1 | -1 | 9 | 7 | 6 | 1.7 | 25683813 | 25775473 | tier1 | Out-of-frame | 18446 | NA | 0 |
| BRCA | TCGA-E2-A1LE-01A | TCGA-E2-A1LE | NFKB2|GBF1 | NFKB2 | GBF1 | 10 | 10 | 1 | 1 | 7 | 4 | 3 | 0.017 | 104156246 | 104128496 | tier1 | Out-of-frame | 11511 | NA | 0.38255 |
| BLCA | TCGA-GU-A42P-01A | TCGA-GU-A42P | IL4R|NSMCE1 | IL4R | NSMCE1 | 16 | 16 | 1 | -1 | 5 | 3 | 3 | 1.6 | 27357939 | 27268902 | tier1 | CDS-5UTR | 8201 | NA | 0.37656 |
| SARC | TCGA-DX-A8BN-01A | TCGA-DX-A8BN | IL4R|ACMSD | IL4R | ACMSD | 16 | 2 | 1 | 1 | 137 | 185 | 173 | 2.1 | 27341519 | 135655911 | tier1 | 5UTR-CDS | 8199 | NA | 0.37705 |
| SKCM | TCGA-BF-A1Q0-01A | TCGA-BF-A1Q0 | IL4R|NSMCE1 | IL4R | NSMCE1 | 16 | 16 | 1 | -1 | 156 | 122 | 114 | 1.6 | 27325341 | 27246620 | tier1 | 5UTR-CDS | 8200 | NA | 0.37656 |
| CESC | TCGA-IR-A3LB-01A | TCGA-IR-A3LB | PAK3|SH2D1A | PAK3 | SH2D1A | X | X | 1 | 1 | 2 | 1 | 1 | 0.23 | 110366506 | 123499611 | tier2 | Out-of-frame | 12214 | NA | 0.38583 |
| BRCA | TCGA-E2-A14N-01A | TCGA-E2-A14N | CAPN6|DCX | CAPN6 | DCX | X | X | -1 | -1 | 19 | 11 | 11 | 1.2 | 110490596 | 110544971 | tier1 | In-frame | 2966 | NA | 0.36827 |
| BRCA | TCGA-BH-A0BP-01A | TCGA-BH-A0BP | SIRT6|CERS4 | SIRT6 | CERS4 | 19 | 19 | -1 | 1 | 14 | 4 | 4 | 0.009 | 4175677 | 8315960 | tier1 | CDS-5UTR | 15961 | NA | 0 |
| LUSC | TCGA-85-8277-01A | TCGA-85-8277 | SIRT6|CREB3L3 | SIRT6 | CREB3L3 | 19 | 19 | -1 | 1 | 54 | 28 | 27 | 0.15 | 4180779 | 4156995 | tier1 | Out-of-frame | 15962 | validated | 0 |
| SKCM | TCGA-EB-A57M-01A | TCGA-EB-A57M | TYR|MMP20 | TYR | MMP20 | 11 | 11 | 1 | -1 | 147 | 76 | 63 | 0.6 | 88924586 | 102480761 | tier1 | In-frame | 19004 | NA | 0 |
| BRCA | TCGA-AN-A0G0-01A | TCGA-AN-A0G0 | ACTN2|CHRM3 | ACTN2 | CHRM3 | 1 | 1 | 1 | 1 | 69 | 63 | 57 | 0.13 | 236850099 | 239841486 | tier1 | CDS-5UTR | 373 | non-validated | 0.3841 |
| STAD | TCGA-KB-A6F7-01A | TCGA-KB-A6F7 | PHF17|LARP1B | PHF17 | LARP1B | 4 | 4 | 1 | 1 | 7 | 40 | 35 | 1 | 129752965 | 129083349 | tier1 | Out-of-frame | 12708 | NA | 0.36026 |
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