Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| THCA | TCGA-CE-A485-01A | TCGA-CE-A485 | SPECC1L|RET | SPECC1L | RET | 22 | 10 | 1 | 1 | 48 | 21 | 17 | 0.39 | 24734445 | 43612032 | tier1 | In-frame | 16700 | NA | 0 |
| THCA | TCGA-ET-A40R-01A | TCGA-ET-A40R | TBL1XR1|RET | TBL1XR1 | RET | 3 | 10 | -1 | 1 | 66 | 38 | 35 | 5.6 | 176765088 | 43612032 | tier1 | In-frame | 17555 | NA | 0 |
| THCA | TCGA-CE-A481-01A | TCGA-CE-A481 | TRIM27|RET | TRIM27 | RET | 6 | 10 | -1 | 1 | 70 | 30 | 25 | 2.1 | 28887789 | 43612032 | tier1 | In-frame | 18626 | NA | 0 |
| HNSC | TCGA-DQ-5624-01A | TCGA-DQ-5624 | MYO19|STK32C | MYO19 | STK32C | 17 | 10 | -1 | -1 | 5 | 4 | 4 | 0.007 | 34881059 | 134137877 | tier1 | NA | 10960 | NA | 0.3525 |
| SARC | TCGA-DX-A8BT-01A | TCGA-DX-A8BT | DOCK1|STK32C | DOCK1 | STK32C | 10 | 10 | 1 | -1 | 63 | 42 | 39 | 0.012 | 128594132 | 134059459 | tier1 | CDS-5UTR | 5026 | NA | 0.37478 |
| SARC | TCGA-QQ-A5VA-01A | TCGA-QQ-A5VA | ZBTB24|STK32C | ZBTB24 | STK32C | 6 | 10 | -1 | -1 | 25 | 14 | 11 | 1.4 | 109797378 | 134059459 | tier1 | CDS-5UTR | 20104 | NA | 0 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | C10orf11|CYP2C19 | C10orf11 | CYP2C19 | 10 | 10 | 1 | 1 | 4 | 8 | 8 | 100 | 77198252 | 96609674 | tier1 | Out-of-frame | 2299 | NA | 0 |
| ESCA | TCGA-L5-A88Y-01A | TCGA-L5-A88Y | PLEKHA1|CYP2C19 | PLEKHA1 | CYP2C19 | 10 | 10 | 1 | 1 | 9 | 32 | 30 | 0.26 | 124159904 | 96602594 | tier1 | In-frame | 12992 | NA | 0.35951 |
| SARC | TCGA-IW-A3M6-01A | TCGA-IW-A3M6 | NUP205|SERPINA12 | NUP205 | SERPINA12 | 7 | 14 | 1 | -1 | 50 | 5 | 5 | 0.13 | 135282166 | 94964767 | tier1 | CDS-5UTR | 11931 | NA | 0.34982 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | MICAL2|NELL1 | MICAL2 | NELL1 | 11 | 11 | 1 | 1 | 15 | 20 | 18 | 0.46 | 12183966 | 21392399 | tier1 | Out-of-frame | 10342 | validated | 0.3605 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | PRPF18|CACNB2 | PRPF18 | CACNB2 | 10 | 10 | 1 | 1 | 10 | 5 | 4 | 0.95 | 13647744 | 18439812 | tier1 | In-frame | 13591 | non-validated | 0.37046 |
| LGG | TCGA-DB-A4XE-01A | TCGA-DB-A4XE | FAM188A|CACNB2 | FAM188A | CACNB2 | 10 | 10 | -1 | 1 | 2 | 6 | 4 | 1.4 | 15902205 | 18787284 | tier2 | Out-of-frame | 6113 | NA | 0.368 |
| BLCA | TCGA-BT-A20X-01A | TCGA-BT-A20X | MARCH9|KCNC2 | MARCH9 | KCNC2 | 12 | 12 | 1 | -1 | 5 | 2 | 2 | 0.6 | 58150867 | 75445097 | tier1 | In-frame | 9991 | NA | 0 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | CCT2|KCNC2 | CCT2 | KCNC2 | 12 | 12 | 1 | -1 | 36 | 20 | 20 | 1.5 | 69980124 | 75437593 | tier1 | Out-of-frame | 3249 | non-validated | 0.36975 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | LEMD3|KCNC2 | LEMD3 | KCNC2 | 12 | 12 | 1 | -1 | 58 | 37 | 34 | 0.96 | 65612399 | 75445097 | tier1 | In-frame | 9286 | NA | 0.363 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | PPP1CC|KCNC2 | PPP1CC | KCNC2 | 12 | 12 | -1 | -1 | 36 | 30 | 27 | 0.16 | 111180458 | 75434986 | tier1 | CDS-3UTR | 13344 | NA | 0.37582 |
| SARC | TCGA-DX-A1L3-01A | TCGA-DX-A1L3 | RAB3IP|KCNC2 | RAB3IP | KCNC2 | 12 | 12 | 1 | -1 | 10 | 3 | 3 | 1.9 | 70150443 | 75445097 | tier1 | In-frame | 14101 | validated | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | TM7SF3|KCNC2 | TM7SF3 | KCNC2 | 12 | 12 | -1 | -1 | 58 | 33 | 30 | 1.9 | 27143383 | 75445097 | tier1 | Out-of-frame | 17869 | NA | 0 |
| SKCM | TCGA-D3-A51H-06A | TCGA-D3-A51H | TMEM117|KCNC2 | TMEM117 | KCNC2 | 12 | 12 | 1 | -1 | 109 | 90 | 79 | 0.55 | 44238731 | 75445097 | tier1 | Out-of-frame | 17935 | NA | 0 |
| BLCA | TCGA-C4-A0F7-01A | TCGA-C4-A0F7 | RFX7|LIPC | RFX7 | LIPC | 15 | 15 | -1 | 1 | 41 | 25 | 24 | 2.6 | 56471468 | 58830532 | tier1 | Out-of-frame | 14618 | validated | 0 |
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