TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
THCA	TCGA-FK-A3SG-01A	TCGA-FK-A3SG	AKAP13\|RET	AKAP13	RET	15	10	1	1	224	214	196	0.22	86284726	43612032	tier1	In-frame	734	NA	0.39352
THCA	TCGA-BJ-A0ZJ-01A	TCGA-BJ-A0ZJ	CCDC6\|RET	CCDC6	RET	10	10	-1	1	84	40	39	0.34	61665880	43612032	tier1	In-frame	3160	NA	0.38748
THCA	TCGA-BJ-A28Z-01A	TCGA-BJ-A28Z	CCDC6\|RET	CCDC6	RET	10	10	-1	1	58	23	17	0.34	61665880	43612032	tier1	In-frame	3161	NA	0.38748
THCA	TCGA-CE-A13K-01A	TCGA-CE-A13K	CCDC6\|RET	CCDC6	RET	10	10	-1	1	65	31	30	0.34	61554231	43612032	tier1	In-frame	3162	NA	0.38748
THCA	TCGA-DJ-A3V3-01A	TCGA-DJ-A3V3	CCDC6\|RET	CCDC6	RET	10	10	-1	1	64	48	42	0.34	61665880	43612032	tier1	In-frame	3163	NA	0.38748
THCA	TCGA-DJ-A4UQ-01A	TCGA-DJ-A4UQ	CCDC6\|RET	CCDC6	RET	10	10	-1	1	80	54	49	0.34	61665880	43612032	tier1	In-frame	3164	NA	0.38748
THCA	TCGA-DJ-A4V5-01A	TCGA-DJ-A4V5	CCDC6\|RET	CCDC6	RET	10	10	-1	1	83	81	70	0.34	61665880	43612032	tier1	In-frame	3165	NA	0.38748
THCA	TCGA-DO-A1JZ-01A	TCGA-DO-A1JZ	CCDC6\|RET	CCDC6	RET	10	10	-1	1	103	66	61	0.34	61665880	43612032	tier1	In-frame	3166	NA	0.38748
THCA	TCGA-E3-A3E0-01A	TCGA-E3-A3E0	CCDC6\|RET	CCDC6	RET	10	10	-1	1	122	75	70	0.34	61665880	43612032	tier1	In-frame	3167	NA	0.38748
THCA	TCGA-EL-A3TB-01A	TCGA-EL-A3TB	CCDC6\|RET	CCDC6	RET	10	10	-1	1	106	76	72	0.34	61665880	43612032	tier1	In-frame	3168	validated	0.38748
THCA	TCGA-EL-A3ZP-01A	TCGA-EL-A3ZP	CCDC6\|RET	CCDC6	RET	10	10	-1	1	55	7	7	0.34	61665880	43612032	tier1	In-frame	3169	NA	0.38748
THCA	TCGA-ET-A3DR-01A	TCGA-ET-A3DR	CCDC6\|RET	CCDC6	RET	10	10	-1	1	89	47	42	0.34	61665880	43612032	tier1	In-frame	3170	NA	0.38748
THCA	TCGA-FK-A3SE-01A	TCGA-FK-A3SE	CCDC6\|RET	CCDC6	RET	10	10	-1	1	228	121	115	0.34	61665880	43612032	tier1	In-frame	3171	validated	0.38748
THCA	TCGA-DE-A69K-01A	TCGA-DE-A69K	DLG5\|RET	DLG5	RET	10	10	-1	1	154	99	90	0.035	79588640	43612032	tier4	In-frame	4890	NA	0.39099
THCA	TCGA-EL-A3T9-01A	TCGA-EL-A3T9	ERC1\|RET	ERC1	RET	12	10	1	1	22	14	13	0.55	1346070	43612032	tier1	In-frame	5752	validated	0.38876
THCA	TCGA-EM-A3FQ-01A	TCGA-EM-A3FQ	ERC1\|RET	ERC1	RET	12	10	1	1	10	17	14	0.55	1553916	43612032	tier1	In-frame	5753	validated	0.38876
THCA	TCGA-CE-A482-01A	TCGA-CE-A482	NCOA4\|RET	NCOA4	RET	10	10	1	1	123	59	46	0.22	51582939	43612032	tier1	In-frame	11213	NA	0.38899
THCA	TCGA-DE-A3KN-01A	TCGA-DE-A3KN	NCOA4\|RET	NCOA4	RET	10	10	1	1	106	44	42	0.22	51582939	43612032	tier1	In-frame	11214	non-validated	0.38899
THCA	TCGA-EL-A3H3-01A	TCGA-EL-A3H3	NCOA4\|RET	NCOA4	RET	10	10	1	1	63	35	35	0.22	51582939	43612032	tier1	In-frame	11215	NA	0.38899
THCA	TCGA-EM-A2CU-01A	TCGA-EM-A2CU	NCOA4\|RET	NCOA4	RET	10	10	1	1	104	46	34	0.22	51582939	43612032	tier1	In-frame	11216	non-validated	0.38899

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