Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | ENTPD5|TSHR | ENTPD5 | TSHR | 14 | 14 | -1 | 1 | 2 | 5 | 5 | 0.95 | 74453517 | 81558875 | tier2 | Out-of-frame | 5603 | NA | 0.37921 |
| SKCM | TCGA-WE-A8ZX-06A | TCGA-WE-A8ZX | NUMB|TSHR | NUMB | TSHR | 14 | 14 | -1 | 1 | 3 | 3 | 3 | 2.9 | 73822334 | 81528492 | tier1 | Out-of-frame | 11903 | NA | 0.38134 |
| THCA | TCGA-BJ-A28Z-01A | TCGA-BJ-A28Z | CSGALNACT2|SLC16A9 | CSGALNACT2 | SLC16A9 | 10 | 10 | 1 | -1 | 15 | 6 | 6 | 0.55 | 43651258 | 61414347 | tier1 | In-frame | 4268 | NA | 0.34059 |
| BLCA | TCGA-XF-A8HD-01A | TCGA-XF-A8HD | C10orf18|AKR1E2 | C10orf18 | AKR1E2 | 10 | 10 | 1 | 1 | 3 | 5 | 5 | 0.48 | 5727138 | 4872867 | tier1 | 5UTR-CDS | 2310 | NA | 0 |
| ESCA | TCGA-IG-A8O2-01A | TCGA-IG-A8O2 | EPC1|AKR1E2 | EPC1 | AKR1E2 | 10 | 10 | -1 | 1 | 6 | 73 | 71 | 2.7 | 32635691 | 4872867 | tier1 | In-frame | 5658 | NA | 0.35177 |
| BLCA | TCGA-ZF-AA4T-01A | TCGA-ZF-AA4T | AP002478.1|TAF3 | AP002478.1 | TAF3 | 18 | 10 | 1 | 1 | 19 | 6 | 6 | 0.002 | 3594482 | 8005883 | tier2 | 5UTR-CDS | 1055 | NA | 0.34816 |
| BRCA | TCGA-AR-A1AP-01A | TCGA-AR-A1AP | GATA3|TAF3 | GATA3 | TAF3 | 10 | 10 | 1 | 1 | 357 | 287 | 243 | 0.53 | 8111561 | 8055694 | tier1 | In-frame | 6969 | NA | 0.36808 |
| BRCA | TCGA-OL-A5D7-01A | TCGA-OL-A5D7 | PTMS|TAF3 | PTMS | TAF3 | 12 | 10 | 1 | 1 | 2 | 88 | 67 | 0.2 | 6880109 | 8017036 | tier2 | NA | 13799 | NA | 0.36538 |
| LUAD | TCGA-69-7761-01A | TCGA-69-7761 | ZNF197|TAF3 | ZNF197 | TAF3 | 3 | 10 | 1 | 1 | 10 | 1 | 1 | 2.6 | 44674091 | 8005883 | tier3 | In-frame | 20393 | NA | 0 |
| PRAD | TCGA-TK-A8OK-01A | TCGA-TK-A8OK | GPATCH8|COMTD1 | GPATCH8 | COMTD1 | 17 | 10 | -1 | -1 | 5 | 4 | 3 | 0.29 | 42580694 | 76994501 | tier2 | Out-of-frame | 7311 | NA | 0.34275 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | UBAC1|QSOX2 | UBAC1 | QSOX2 | 9 | 9 | -1 | -1 | 9 | 4 | 4 | 0.086 | 138839644 | 139118720 | tier1 | Out-of-frame | 19031 | validated | 0 |
| LUSC | TCGA-NC-A5HN-01A | TCGA-NC-A5HN | TMCC1|QSOX2 | TMCC1 | QSOX2 | 3 | 9 | -1 | -1 | 8 | 4 | 4 | 0.97 | 129546646 | 139116755 | tier1 | In-frame | 17898 | NA | 0 |
| BRCA | TCGA-AO-A12F-01A | TCGA-AO-A12F | B4GALT7|NSD1 | B4GALT7 | NSD1 | 5 | 5 | 1 | 1 | 6 | 12 | 10 | 1 | 177035623 | 176618885 | tier1 | In-frame | 1882 | NA | 0.37137 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | CDH23|NSD1 | CDH23 | NSD1 | 10 | 5 | 1 | 1 | 8 | 4 | 4 | 0.42 | 73501678 | 176618885 | tier1 | In-frame | 3389 | NA | 0.37712 |
| LAML | TCGA-AB-2918-03A | TCGA-AB-2918 | NUP98|NSD1 | NUP98 | NSD1 | 11 | 5 | -1 | 1 | 8 | 3 | 3 | 0.92 | 3774546 | 176662822 | tier1 | In-frame | 11952 | NA | 0.37534 |
| LAML | TCGA-AB-2930-03A | TCGA-AB-2930 | NUP98|NSD1 | NUP98 | NSD1 | 11 | 5 | -1 | 1 | 4 | 5 | 5 | 0.92 | 3765739 | 176662822 | tier1 | In-frame | 11953 | NA | 0.37534 |
| UCS | TCGA-N6-A4VC-01A | TCGA-N6-A4VC | B4GALT7|NSD1 | B4GALT7 | NSD1 | 5 | 5 | 1 | 1 | 2 | 5 | 5 | 1 | 177027261 | 176665238 | tier2 | Out-of-frame | 1883 | NA | 0.37137 |
| HNSC | TCGA-DQ-7589-01A | TCGA-DQ-7589 | HAUS6|PMPCA | HAUS6 | PMPCA | 9 | 9 | -1 | 1 | 3 | 5 | 3 | 1.7 | 19094315 | 139306942 | tier1 | Out-of-frame | 7594 | NA | 0.34854 |
| STAD | TCGA-R5-A7ZF-01A | TCGA-R5-A7ZF | SKP1|PMPCA | SKP1 | PMPCA | 5 | 9 | -1 | 1 | 2 | 7 | 2 | 1.8 | 133561451 | 139316284 | tier3 | NA | 15999 | NA | 0 |
| BRCA | TCGA-C8-A1HJ-01A | TCGA-C8-A1HJ | ERC1|RET | ERC1 | RET | 12 | 10 | 1 | 1 | 16 | 12 | 12 | 0.55 | 1250953 | 43612032 | tier1 | In-frame | 5751 | NA | 0.38876 |
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