Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | CDH18|TERT | CDH18 | TERT | 5 | 5 | -1 | -1 | 4 | 4 | 4 | 0.51 | 19612543 | 1282739 | tier1 | In-frame | 3385 | NA | 0.37296 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | GLIS3|TERT | GLIS3 | TERT | 9 | 5 | -1 | -1 | 10 | 2 | 1 | 0.022 | 4117768 | 1282739 | tier2 | Out-of-frame | 7115 | non-validated | 0.37448 |
| SKCM | TCGA-FW-A5DX-01A | TCGA-FW-A5DX | DROSHA|TERT | DROSHA | TERT | 5 | 5 | -1 | -1 | 35 | 14 | 11 | 2.7 | 31421379 | 1282739 | tier2 | Out-of-frame | 5114 | NA | 0.36408 |
| THCA | TCGA-BJ-A4O9-01A | TCGA-BJ-A4O9 | MTMR12|TERT | MTMR12 | TERT | 5 | 5 | -1 | -1 | 8 | 5 | 5 | 0.017 | 32263219 | 1294781 | tier1 | Out-of-frame | 10814 | NA | 0.3659 |
| LIHC | TCGA-CC-5264-01A | TCGA-CC-5264 | SPEF2|SLC6A18 | SPEF2 | SLC6A18 | 5 | 5 | 1 | 1 | 2 | 4 | 3 | 1.6 | 35649527 | 1242822 | tier3 | In-frame | 16707 | NA | 0 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | ASCC3|GRIK2 | ASCC3 | GRIK2 | 6 | 6 | -1 | 1 | 3 | 2 | 2 | 0.41 | 101214441 | 102192474 | tier1 | In-frame | 1508 | NA | 0.36881 |
| BRCA | TCGA-AN-A0XW-01A | TCGA-AN-A0XW | BCAS3|GRIK2 | BCAS3 | GRIK2 | 17 | 6 | 1 | 1 | 3 | 2 | 2 | 0.63 | 59001861 | 102069824 | tier1 | In-frame | 1981 | NA | 0.363 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | KIAA1244|GRIK2 | KIAA1244 | GRIK2 | 6 | 6 | 1 | 1 | 11 | 5 | 5 | 0.21 | 138601301 | 102483216 | tier1 | Out-of-frame | 8840 | NA | 0.3624 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | SAMD3|GRIK2 | SAMD3 | GRIK2 | 6 | 6 | -1 | 1 | 7 | 6 | 6 | 0.65 | 130634123 | 102483216 | tier1 | 5UTR-CDS | 15288 | NA | 0 |
| BLCA | TCGA-CF-A1HS-01A | TCGA-CF-A1HS | RICTOR|HCN1 | RICTOR | HCN1 | 5 | 5 | -1 | -1 | 6 | 3 | 3 | 0.15 | 39074213 | 45645710 | tier1 | Out-of-frame | 14679 | NA | 0 |
| LGG | TCGA-DU-A5TY-01A | TCGA-DU-A5TY | TBC1D15|BMPER | TBC1D15 | BMPER | 12 | 7 | 1 | 1 | 168 | 75 | 68 | 0.3 | 72266783 | 33976901 | tier1 | In-frame | 17452 | NA | 0 |
| LUSC | TCGA-56-8083-01A | TCGA-56-8083 | ANKIB1|LMTK2 | ANKIB1 | LMTK2 | 7 | 7 | 1 | 1 | 14 | 11 | 11 | 0.56 | 91981956 | 97814363 | tier1 | In-frame | 929 | NA | 0.36833 |
| HNSC | TCGA-CV-A45X-01A | TCGA-CV-A45X | TRAPPC9|SLC30A8 | TRAPPC9 | SLC30A8 | 8 | 8 | -1 | 1 | 3 | 1 | 1 | 0.25 | 141436714 | 118159058 | tier2 | CDS-5UTR | 18586 | NA | 0 |
| BRCA | TCGA-EW-A1PB-01A | TCGA-EW-A1PB | PSPH|PHKG1 | PSPH | PHKG1 | 7 | 7 | -1 | -1 | 36 | 22 | 21 | 0.038 | 56118831 | 56156668 | tier4 | 5UTR-5UTR | 13743 | non-validated | 0.37584 |
| LUAD | TCGA-91-7771-01A | TCGA-91-7771 | ARMC1|SPAG11B | ARMC1 | SPAG11B | 8 | 8 | -1 | -1 | 9 | 17 | 11 | 100 | 66525479 | 7308721 | tier1 | Out-of-frame | 1412 | NA | 0.34098 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | MSRA|SPAG11B | MSRA | SPAG11B | 8 | 8 | 1 | -1 | 5 | 4 | 4 | 100 | 9912168 | 7320381 | tier1 | In-frame | 10751 | NA | 0.34065 |
| ESCA | TCGA-V5-A7RB-01A | TCGA-V5-A7RB | MICALL2|CA3 | MICALL2 | CA3 | 7 | 8 | -1 | 1 | 9 | 66 | 64 | 0.68 | 1481828 | 86354302 | tier1 | In-frame | 10349 | NA | 0.34743 |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | DERA|CA3 | DERA | CA3 | 12 | 8 | 1 | 1 | 7 | 9 | 9 | 0.37 | 16064348 | 86351941 | tier1 | In-frame | 4727 | NA | 0.34245 |
| CHOL | TCGA-ZU-A8S4-01A | TCGA-ZU-A8S4 | ELP4|FREM1 | ELP4 | FREM1 | 11 | 9 | 1 | -1 | 2 | 1 | 1 | 0.2 | 31625454 | 14816869 | tier3 | In-frame | 5542 | NA | 0.34135 |
| LUSC | TCGA-43-6143-01A | TCGA-43-6143 | NFIB|FREM1 | NFIB | FREM1 | 9 | 9 | -1 | -1 | 3 | 6 | 6 | 3 | 14146688 | 14759899 | tier1 | Out-of-frame | 11472 | NA | 0.36159 |
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