Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AN-A04C-01A | TCGA-AN-A04C | FAM160A1|IL15 | FAM160A1 | IL15 | 4 | 4 | 1 | 1 | 31 | 36 | 35 | 0.081 | 152510078 | 142653891 | tier1 | In-frame | 6068 | NA | 0.35992 |
| PRAD | TCGA-V1-A9OQ-01A | TCGA-V1-A9OQ | NAA15|HHIP | NAA15 | HHIP | 4 | 4 | 1 | 1 | 4 | 2 | 2 | 2.2 | 140222985 | 145580789 | tier1 | Out-of-frame | 11035 | NA | 0.3483 |
| LUSC | TCGA-85-8354-01A | TCGA-85-8354 | EXT2|PRMT10 | EXT2 | PRMT10 | 11 | 4 | 1 | -1 | 16 | 12 | 12 | 1.5 | 44151688 | 148601622 | tier1 | In-frame | 5940 | NA | 0.34425 |
| SKCM | TCGA-EB-A5KH-06A | TCGA-EB-A5KH | DGCR8|ITGA2 | DGCR8 | ITGA2 | 22 | 5 | 1 | 1 | 2 | 1 | 1 | 0.36 | 20080430 | 52385776 | tier2 | Out-of-frame | 4745 | NA | 0.36866 |
| LUSC | TCGA-56-6545-01A | TCGA-56-6545 | PJA2|GPR98 | PJA2 | GPR98 | 5 | 5 | -1 | 1 | 151 | 506 | 484 | 0.97 | 108745543 | 90445847 | tier1 | 5UTR-CDS | 12904 | NA | 0.36199 |
| PRAD | TCGA-ZG-A9ND-01A | TCGA-ZG-A9ND | KIAA0825|GPR98 | KIAA0825 | GPR98 | 5 | 5 | -1 | 1 | 3 | 3 | 3 | 0.29 | 93918138 | 90124761 | tier1 | 5UTR-CDS | 8802 | NA | 0.3512 |
| SKCM | TCGA-EE-A2MS-06A | TCGA-EE-A2MS | ERGIC1|GPR98 | ERGIC1 | GPR98 | 5 | 5 | 1 | 1 | 50 | 38 | 36 | 0.78 | 172359539 | 90083888 | tier1 | In-frame | 5773 | NA | 0.34154 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | CCDC99|SCGB3A2 | CCDC99 | SCGB3A2 | 5 | 5 | 1 | 1 | 100 | 50 | 47 | 0.58 | 169010893 | 147261009 | tier1 | 5UTR-CDS | 3202 | NA | 0.35976 |
| SARC | TCGA-DX-AB2P-01A | TCGA-DX-AB2P | MARCH3|HTR4 | MARCH3 | HTR4 | 5 | 5 | -1 | -1 | 2 | 1 | 1 | 0.038 | 126250622 | 147929825 | tier2 | Out-of-frame | 9981 | NA | 0 |
| LUSC | TCGA-63-A5MY-01A | TCGA-63-A5MY | RNF180|GPX8 | RNF180 | GPX8 | 5 | 5 | 1 | 1 | 4 | 9 | 8 | 0.16 | 63513223 | 54459883 | tier1 | Out-of-frame | 14790 | NA | 0 |
| PRAD | TCGA-KK-A6E8-01A | TCGA-KK-A6E8 | C3orf26|ENPP6 | C3orf26 | ENPP6 | 3 | 4 | 1 | -1 | 3 | 3 | 3 | 2 | 99536887 | 185074886 | tier1 | In-frame | 2707 | NA | 0 |
| KIRC | TCGA-BP-5004-01A | TCGA-BP-5004 | FAM172A|ERAP2 | FAM172A | ERAP2 | 5 | 5 | -1 | 1 | 3 | 7 | 6 | 0.072 | 93386436 | 96251392 | tier1 | Out-of-frame | 6100 | NA | 0.34197 |
| ACC | TCGA-OR-A5JS-01A | TCGA-OR-A5JS | CCDC47|TERT | CCDC47 | TERT | 17 | 5 | -1 | -1 | 3 | 2 | 2 | 0.49 | 61850772 | 1282739 | tier1 | 5UTR-CDS | 3141 | NA | 0.36865 |
| BRCA | TCGA-C8-A131-01A | TCGA-C8-A131 | TTLL7|TERT | TTLL7 | TERT | 1 | 5 | -1 | -1 | 9 | 1 | 1 | 1.1 | 84464614 | 1282739 | tier2 | 5UTR-CDS | 18914 | NA | 0 |
| GBM | TCGA-06-2564-01A | TCGA-06-2564 | CCDC127|TERT | CCDC127 | TERT | 5 | 5 | -1 | -1 | 3 | 8 | 8 | 0.21 | 216844 | 1282739 | tier1 | In-frame | 3114 | NA | 0.36959 |
| GBM | TCGA-27-1835-01A | TCGA-27-1835 | NAA30|TERT | NAA30 | TERT | 14 | 5 | 1 | -1 | 5 | 10 | 8 | 0.09 | 57866601 | 1282739 | tier1 | Out-of-frame | 11042 | NA | 0.36408 |
| KICH | TCGA-KN-8435-01A | TCGA-KN-8435 | PDCD6|TERT | PDCD6 | TERT | 5 | 5 | 1 | -1 | 3 | 3 | 3 | 0.16 | 271936 | 1294781 | tier1 | Out-of-frame | 12455 | non-validated | 0.37077 |
| KIRC | TCGA-BP-4991-01A | TCGA-BP-4991 | PDCD6|TERT | PDCD6 | TERT | 5 | 5 | 1 | -1 | 14 | 14 | 13 | 0.16 | 272887 | 1282739 | tier1 | In-frame | 12454 | NA | 0.37077 |
| KIRP | TCGA-UZ-A9PN-01A | TCGA-UZ-A9PN | FAM134B|TERT | FAM134B | TERT | 5 | 5 | -1 | -1 | 42 | 28 | 27 | 0.038 | 16508687 | 1282739 | tier1 | Out-of-frame | 6048 | NA | 0.367 |
| LIHC | TCGA-DD-AACS-01A | TCGA-DD-AACS | KIAA0947|TERT | KIAA0947 | TERT | 5 | 5 | 1 | -1 | 5 | 1 | 1 | 4 | 5448010 | 1282739 | tier2 | In-frame | 8815 | NA | 0.37133 |
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