Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-D3-A3BZ-06A | TCGA-D3-A3BZ | PRICKLE2|ADAMTS9 | PRICKLE2 | ADAMTS9 | 3 | 3 | -1 | -1 | 3 | 3 | 3 | 0.18 | 64210586 | 64644467 | tier1 | 5UTR-CDS | 13518 | NA | 0.34967 |
| PRAD | TCGA-G9-6339-01A | TCGA-G9-6339 | CBLB|IL17RE | CBLB | IL17RE | 3 | 3 | -1 | 1 | 3 | 1 | 1 | 0.67 | 105572258 | 9944574 | tier2 | In-frame | 3077 | NA | 0.37817 |
| BRCA | TCGA-AR-A1AT-01A | TCGA-AR-A1AT | C1orf132|GRIK3 | C1orf132 | GRIK3 | 1 | 1 | -1 | -1 | 15 | 12 | 11 | 0.65 | 208041271 | 37356697 | tier1 | NA | 2587 | NA | 0 |
| BRCA | TCGA-BH-A18T-01A | TCGA-BH-A18T | LRBA|GRIK3 | LRBA | GRIK3 | 4 | 1 | -1 | -1 | 3 | 2 | 2 | 3.4 | 151518235 | 37271927 | tier1 | Out-of-frame | 9477 | NA | 0.36542 |
| BRCA | TCGA-OK-A5Q2-01A | TCGA-OK-A5Q2 | MACF1|GRIK3 | MACF1 | GRIK3 | 1 | 1 | 1 | -1 | 3 | 1 | 1 | 2.2 | 39696915 | 37307540 | tier4 | In-frame | 9729 | NA | 0.37198 |
| SKCM | TCGA-W3-AA1R-06A | TCGA-W3-AA1R | CMTM8|RPN1 | CMTM8 | RPN1 | 3 | 3 | 1 | -1 | 26 | 30 | 28 | 0.33 | 32280611 | 128345675 | tier1 | Out-of-frame | 3900 | NA | 0.35111 |
| MESO | TCGA-UD-AABY-01A | TCGA-UD-AABY | GNL3|BAP1 | GNL3 | BAP1 | 3 | 3 | 1 | -1 | 6 | 2 | 1 | 1 | 52725645 | 52442093 | tier3 | Out-of-frame | 7241 | NA | 0.35831 |
| MESO | TCGA-LK-A4O5-01A | TCGA-LK-A4O5 | RP11-155D18.11|BAP1 | RP11-155D18.11 | BAP1 | 3 | 3 | 1 | -1 | 11 | 2 | 2 | 0.89 | 52021640 | 52441476 | tier1 | In-frame | 14919 | NA | 0 |
| UCEC | TCGA-B5-A5OD-01A | TCGA-B5-A5OD | RFT1|TKT | RFT1 | TKT | 3 | 3 | -1 | -1 | 76 | 79 | 73 | 1.9 | 53159925 | 53276258 | tier1 | In-frame | 14593 | NA | 0 |
| THYM | TCGA-ZB-A969-01A | TCGA-ZB-A969 | NCKIPSD|SFMBT1 | NCKIPSD | SFMBT1 | 3 | 3 | -1 | -1 | 2 | 3 | 2 | 1.6 | 48723070 | 52968917 | tier3 | Out-of-frame | 11173 | NA | 0.36854 |
| UCEC | TCGA-PG-A5BC-01A | TCGA-PG-A5BC | COG4|MFI2 | COG4 | MFI2 | 16 | 3 | -1 | -1 | 18 | 5 | 5 | 0.4 | 70534861 | 196753630 | tier1 | Out-of-frame | 3970 | NA | 0.3491 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | UBE2D3|SLC9B1 | UBE2D3 | SLC9B1 | 4 | 4 | -1 | -1 | 5 | 8 | 7 | 0.27 | 103789872 | 103912869 | tier1 | CDS-5UTR | 19062 | NA | 0 |
| LUSC | TCGA-66-2771-01A | TCGA-66-2771 | UBE2D3|SLC9B1 | UBE2D3 | SLC9B1 | 4 | 4 | -1 | -1 | 2 | 2 | 1 | 0.27 | 103789872 | 103832694 | tier3 | Out-of-frame | 19061 | NA | 0 |
| LIHC | TCGA-DD-A1EJ-01A | TCGA-DD-A1EJ | UBE2K|SLC9B2 | UBE2K | SLC9B2 | 4 | 4 | 1 | -1 | 7 | 5 | 5 | 2 | 39757359 | 103952965 | tier1 | Out-of-frame | 19087 | validated | 0 |
| BRCA | TCGA-AO-A1KR-01A | TCGA-AO-A1KR | ZNF589|CAMP | ZNF589 | CAMP | 3 | 3 | 1 | 1 | 73 | 67 | 19 | 0.31 | 48299451 | 48265844 | tier1 | In-frame | 20577 | NA | 0 |
| GBM | TCGA-14-2554-01A | TCGA-14-2554 | ARIH2|CAMP | ARIH2 | CAMP | 3 | 3 | 1 | 1 | 39 | 133 | 108 | 0.45 | 48965246 | 48265844 | tier1 | In-frame | 1388 | non-validated | 0.37184 |
| MESO | TCGA-UD-AABY-01A | TCGA-UD-AABY | GLT8D1|PLXNB1 | GLT8D1 | PLXNB1 | 3 | 3 | -1 | -1 | 7 | 7 | 5 | 0.6 | 52729206 | 48445997 | tier1 | Out-of-frame | 7126 | NA | 0.37513 |
| UCEC | TCGA-B5-A0JN-01A | TCGA-B5-A0JN | MAP4|PLXNB1 | MAP4 | PLXNB1 | 3 | 3 | -1 | -1 | 3 | 3 | 2 | 0.67 | 48019355 | 48457168 | tier1 | Out-of-frame | 9892 | non-validated | 0.37852 |
| CESC | TCGA-DS-A7WH-01A | TCGA-DS-A7WH | SH3BP4|MST1R | SH3BP4 | MST1R | 2 | 3 | 1 | -1 | 39 | 53 | 37 | 0.85 | 235904020 | 49936696 | tier1 | 5UTR-CDS | 15809 | NA | 0 |
| UCEC | TCGA-AJ-A3NF-01A | TCGA-AJ-A3NF | HADH|HPGD | HADH | HPGD | 4 | 4 | 1 | -1 | 27 | 17 | 16 | 0.77 | 108911220 | 175429943 | tier1 | In-frame | 7581 | NA | 0.34379 |
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