Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCS | TCGA-N6-A4VC-01A | TCGA-N6-A4VC | ARHGEF2|SSR2 | ARHGEF2 | SSR2 | 1 | 1 | -1 | -1 | 152 | 90 | 81 | 0.17 | 155921274 | 155979441 | tier1 | In-frame | 1318 | NA | 0.37474 |
| UCS | TCGA-N8-A4PO-01A | TCGA-N8-A4PO | MYH14|FBLN2 | MYH14 | FBLN2 | 19 | 3 | 1 | 1 | 9 | 4 | 4 | 0.31 | 50805126 | 13649562 | tier1 | Out-of-frame | 10890 | NA | 0.36994 |
| COAD | TCGA-DM-A0XF-01A | TCGA-DM-A0XF | SKIL|PRKCI | SKIL | PRKCI | 3 | 3 | 1 | 1 | 5 | 1 | 1 | 0.21 | 170079217 | 169981167 | tier3 | Out-of-frame | 15987 | NA | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | MB21D2|CTLA4 | MB21D2 | CTLA4 | 3 | 2 | -1 | 1 | 14 | 7 | 7 | 0.82 | 192635419 | 204735309 | tier1 | In-frame | 10043 | validated | 0.3697 |
| KIRC | TCGA-BP-4346-01A | TCGA-BP-4346 | ZBTB20|CD200R1 | ZBTB20 | CD200R1 | 3 | 3 | -1 | -1 | 19 | 11 | 11 | 0.14 | 114519948 | 112666771 | tier1 | 5UTR-CDS | 20079 | NA | 0 |
| BLCA | TCGA-4Z-AA7Q-01A | TCGA-4Z-AA7Q | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 3 | 1 | 1 | 0.83 | 87928576 | 87718027 | tier2 | Out-of-frame | 582 | NA | 0.37171 |
| BLCA | TCGA-4Z-AA87-01A | TCGA-4Z-AA87 | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 43 | 48 | 46 | 0.83 | 87869723 | 87718027 | tier1 | Out-of-frame | 583 | NA | 0.37171 |
| BLCA | TCGA-DK-A1AD-01A | TCGA-DK-A1AD | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 11 | 6 | 5 | 0.83 | 87869723 | 87637683 | tier1 | Out-of-frame | 585 | NA | 0.37171 |
| BLCA | TCGA-E7-A6MD-01A | TCGA-E7-A6MD | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 21 | 14 | 11 | 0.83 | 88046295 | 87720254 | tier1 | In-frame | 586 | NA | 0.37171 |
| BLCA | TCGA-GC-A3BM-01A | TCGA-GC-A3BM | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 15 | 3 | 3 | 0.83 | 88048855 | 87666119 | tier1 | In-frame | 588 | NA | 0.37171 |
| CESC | TCGA-EA-A5ZD-01A | TCGA-EA-A5ZD | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 261 | 169 | 148 | 0.83 | 88048855 | 87718027 | tier1 | In-frame | 587 | NA | 0.37171 |
| LUAD | TCGA-05-4249-01A | TCGA-05-4249 | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 3 | 4 | 4 | 0.83 | 87869723 | 87556405 | tier1 | CDS-5UTR | 581 | NA | 0.37171 |
| LUSC | TCGA-60-2695-01A | TCGA-60-2695 | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 2 | 1 | 1 | 0.83 | 87869723 | 87556405 | tier3 | CDS-5UTR | 584 | non-validated | 0.37171 |
| LUSC | TCGA-43-5668-01A | TCGA-43-5668 | MARCH1|PTPN13 | MARCH1 | PTPN13 | 4 | 4 | -1 | 1 | 4 | 2 | 2 | 0.52 | 164909653 | 87556405 | tier1 | 5UTR-5UTR | 9978 | NA | 0 |
| LIHC | TCGA-XR-A8TE-01A | TCGA-XR-A8TE | DYNC1I1|ALB | DYNC1I1 | ALB | 7 | 4 | 1 | 1 | 2 | 3 | 2 | 2.9 | 95657633 | 74270034 | tier3 | CDS-5UTR | 5209 | NA | 0.36796 |
| LIHC | TCGA-DD-A11C-01A | TCGA-DD-A11C | MACF1|ALB | MACF1 | ALB | 1 | 4 | 1 | 1 | 2 | 1 | 1 | 1.9 | 39916883 | 74270034 | tier2 | CDS-5UTR | 9725 | NA | 0.37212 |
| LIHC | TCGA-DD-A11A-01A | TCGA-DD-A11A | NBAS|ALB | NBAS | ALB | 2 | 4 | -1 | 1 | 2 | 1 | 1 | 0.17 | 15307033 | 74270025 | tier3 | 3UTR-5UTR | 11111 | NA | 0.35787 |
| LIHC | TCGA-DD-AACH-01A | TCGA-DD-AACH | NBAS|ALB | NBAS | ALB | 2 | 4 | -1 | 1 | 2 | 7 | 6 | 0.17 | 15307033 | 74270025 | tier3 | 3UTR-5UTR | 11112 | NA | 0.35787 |
| LIHC | TCGA-DD-AADK-01A | TCGA-DD-AADK | SEPX1|ALB | SEPX1 | ALB | 16 | 4 | -1 | 1 | 2 | 1 | 1 | 1.4 | 1989020 | 74270004 | tier4 | 3UTR-5UTR | 15624 | NA | 0 |
| LIHC | TCGA-DD-A73F-01A | TCGA-DD-A73F | UBR4|ALB | UBR4 | ALB | 1 | 4 | -1 | 1 | 3 | 1 | 1 | 0.37 | 19437236 | 74270021 | tier2 | CDS-5UTR | 19146 | NA | 0 |
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