TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
PCPG	TCGA-WB-A81S-01A	TCGA-WB-A81S	TRIP12\|SLC16A14	TRIP12	SLC16A14	2	2	-1	-1	20	26	24	0.29	230723488	230902247	tier4	In-frame	18690	NA	0
LUAD	TCGA-86-8673-01A	TCGA-86-8673	PRPF3\|CTSS	PRPF3	CTSS	1	1	1	-1	5	7	6	1.2	150294041	150730456	tier1	5UTR-CDS	13595	NA	0.36667
LUSC	TCGA-68-7755-01A	TCGA-68-7755	OTUD7B\|CTSS	OTUD7B	CTSS	1	1	-1	-1	209	194	163	3.2	149949361	150705621	tier1	Out-of-frame	12115	validated	0.36431
UCEC	TCGA-AJ-A3BF-01A	TCGA-AJ-A3BF	RRNAD1\|CTSS	RRNAD1	CTSS	1	1	1	-1	13	6	5	0.094	156699007	150730456	tier1	In-frame	15135	NA	0
HNSC	TCGA-BA-5555-01A	TCGA-BA-5555	C19orf22\|S100A9	C19orf22	S100A9	19	1	-1	1	2	9	9	0.13	896503	153330330	tier3	3UTR-5UTR	2569	NA	0
BRCA	TCGA-AR-A256-01A	TCGA-AR-A256	TIA1\|TGFA	TIA1	TGFA	2	2	-1	-1	38	42	38	0.73	70475537	70692865	tier1	Out-of-frame	17815	validated	0
BRCA	TCGA-A2-A1FW-01A	TCGA-A2-A1FW	C20orf194\|TDRD10	C20orf194	TDRD10	20	1	-1	1	9	8	7	0.004	3354695	154514500	tier1	Out-of-frame	2643	NA	0
BRCA	TCGA-S3-A6ZF-01A	TCGA-S3-A6ZF	CCDC149\|GABRB1	CCDC149	GABRB1	4	4	-1	1	4	2	2	0.42	24914439	47033931	tier1	Out-of-frame	3123	NA	0.3622
BRCA	TCGA-A8-A09A-01A	TCGA-A8-A09A	LNX1\|GABRB1	LNX1	GABRB1	4	4	-1	1	4	5	5	0.082	54439790	47322144	tier1	In-frame	9417	NA	0.37599
LUSC	TCGA-34-5241-01A	TCGA-34-5241	ZNF430\|GABRB1	ZNF430	GABRB1	19	4	1	1	2	4	4	3.6	21216990	47033931	tier3	Out-of-frame	20500	NA	0
STAD	TCGA-CG-4476-01A	TCGA-CG-4476	ERC1\|GABRB1	ERC1	GABRB1	12	4	1	1	3	1	1	0.017	1299218	47322144	tier4	In-frame	5744	NA	0.36558
UCEC	TCGA-EO-A3AS-01A	TCGA-EO-A3AS	PMVK\|PYGO2	PMVK	PYGO2	1	1	-1	-1	16	11	8	0.14	154904828	154932322	tier1	In-frame	13118	NA	0.35102
LUAD	TCGA-67-6217-01A	TCGA-67-6217	FHIT\|FAM19A4	FHIT	FAM19A4	3	3	-1	-1	2	1	1	0.46	60807613	68934461	tier3	5UTR-5UTR	6522	NA	0.36209
LUAD	TCGA-44-A4SS-01A	TCGA-44-A4SS	VPS4B\|SLC22A15	VPS4B	SLC22A15	18	1	-1	1	5	2	2	0.56	61089466	116562203	tier1	In-frame	19654	NA	0
PRAD	TCGA-EJ-7784-01A	TCGA-EJ-7784	C1orf55\|SLC22A15	C1orf55	SLC22A15	1	1	-1	1	7	6	6	2.3	226182967	116562203	tier1	Out-of-frame	2605	NA	0
SKCM	TCGA-EB-A44R-06A	TCGA-EB-A44R	ALG6\|SLC22A15	ALG6	SLC22A15	1	1	1	1	3	5	1	2	63836730	116569514	tier2	In-frame	836	NA	0.33827
STAD	TCGA-VQ-A925-01A	TCGA-VQ-A925	SEL1L3\|CCKAR	SEL1L3	CCKAR	4	4	-1	-1	2	55	53	0.023	25759156	26484905	tier2	Out-of-frame	15539	NA	0
PRAD	TCGA-HC-8265-01B	TCGA-HC-8265	LRRC58\|FSTL1	LRRC58	FSTL1	3	3	-1	-1	2	1	1	0.14	120067591	120134874	tier2	Out-of-frame	9575	NA	0.34653
BRCA	TCGA-AR-A256-01A	TCGA-AR-A256	ARHGEF2\|SSR2	ARHGEF2	SSR2	1	1	-1	-1	51	27	27	0.17	155932724	155981678	tier1	In-frame	1317	non-validated	0.37474
PCPG	TCGA-WB-A81J-01A	TCGA-WB-A81J	ARMC9\|SSR2	ARMC9	SSR2	2	1	1	-1	6	15	14	0.35	232160966	155988159	tier1	Out-of-frame	1425	NA	0.33974

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