Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | MKL1|NTNG1 | MKL1 | NTNG1 | 22 | 1 | -1 | 1 | 6 | 3 | 3 | 2.6 | 41032482 | 107937776 | tier1 | 5UTR-CDS | 10403 | NA | 0.36424 |
| BRCA | TCGA-D8-A27F-01A | TCGA-D8-A27F | SKI|KCNT2 | SKI | KCNT2 | 1 | 1 | 1 | -1 | 14 | 6 | 3 | 0.028 | 2161174 | 196461471 | tier1 | Out-of-frame | 15980 | validated | 0 |
| LUAD | TCGA-05-4432-01A | TCGA-05-4432 | TADA1|CADM3 | TADA1 | CADM3 | 1 | 1 | -1 | 1 | 114 | 113 | 100 | 1 | 166838682 | 159169541 | tier1 | In-frame | 17304 | validated | 0 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | FGF13|NLRP3 | FGF13 | NLRP3 | X | 1 | -1 | 1 | 12 | 10 | 10 | 1.4 | 137939674 | 247611707 | tier1 | Out-of-frame | 6450 | NA | 0.3545 |
| BRCA | TCGA-BH-A1EV-01A | TCGA-BH-A1EV | USPL1|IGSF8 | USPL1 | IGSF8 | 13 | 1 | 1 | -1 | 16 | 8 | 5 | 3.9 | 31205611 | 160063961 | tier1 | In-frame | 19447 | NA | 0 |
| MESO | TCGA-TS-A7OZ-01A | TCGA-TS-A7OZ | NRIP1|IGSF8 | NRIP1 | IGSF8 | 21 | 1 | -1 | -1 | 12 | 17 | 14 | 0.65 | 16386665 | 160062485 | tier4 | 5UTR-CDS | 11754 | NA | 0.36459 |
| HNSC | TCGA-CV-7422-01A | TCGA-CV-7422 | TRABD|DDR2 | TRABD | DDR2 | 22 | 1 | 1 | 1 | 5 | 14 | 3 | 3.2 | 50624405 | 162625001 | tier1 | 5UTR-5UTR | 18540 | NA | 0 |
| SKCM | TCGA-DA-A1IA-06A | TCGA-DA-A1IA | KIRREL|DDR2 | KIRREL | DDR2 | 1 | 1 | 1 | 1 | 2 | 8 | 1 | 0.22 | 157963518 | 162625001 | tier3 | CDS-5UTR | 9024 | NA | 0.38506 |
| BRCA | TCGA-E2-A10A-01A | TCGA-E2-A10A | GATAD2B|SLC9A11 | GATAD2B | SLC9A11 | 1 | 1 | -1 | -1 | 2 | 1 | 1 | 0.34 | 153788749 | 173478838 | tier2 | Out-of-frame | 6992 | NA | 0.3667 |
| OV | TCGA-13-0799-01A | TCGA-13-0799 | CEP350|TDRD5 | CEP350 | TDRD5 | 1 | 1 | 1 | 1 | 5 | 6 | 6 | 0.15 | 180010383 | 179659831 | tier1 | Out-of-frame | 3552 | NA | 0.35941 |
| SKCM | TCGA-FS-A1ZD-06A | TCGA-FS-A1ZD | ADSS|BPNT1 | ADSS | BPNT1 | 1 | 1 | -1 | -1 | 6 | 4 | 4 | 100 | 244614937 | 220263293 | tier1 | CDS-5UTR | 553 | non-validated | 0.34303 |
| BRCA | TCGA-AO-A0J6-01A | TCGA-AO-A0J6 | ARHGEF3|ACP6 | ARHGEF3 | ACP6 | 3 | 1 | -1 | -1 | 27 | 12 | 10 | 0.88 | 56916320 | 147131890 | tier1 | In-frame | 1321 | non-validated | 0.36266 |
| GBM | TCGA-19-2619-01A | TCGA-19-2619 | NUCKS1|PM20D1 | NUCKS1 | PM20D1 | 1 | 1 | -1 | -1 | 4 | 112 | 79 | 0.5 | 205719085 | 205811017 | tier1 | In-frame | 11854 | NA | 0.3418 |
| PCPG | TCGA-RW-A8AZ-01A | TCGA-RW-A8AZ | EML4|PKDCC | EML4 | PKDCC | 2 | 2 | 1 | 1 | 4 | 5 | 4 | 0.49 | 42396776 | 42280379 | tier1 | Out-of-frame | 5570 | NA | 0.36304 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | EML4|PKDCC | EML4 | PKDCC | 2 | 2 | 1 | 1 | 4 | 6 | 5 | 0.49 | 42553392 | 42280379 | tier1 | Out-of-frame | 5569 | NA | 0.36304 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | PDZRN3|FCAMR | PDZRN3 | FCAMR | 3 | 1 | -1 | -1 | 4 | 3 | 3 | 0.032 | 73651505 | 207143565 | tier1 | CDS-5UTR | 12590 | NA | 0.37425 |
| CESC | TCGA-EA-A97N-01A | TCGA-EA-A97N | TRIP12|SLC16A14 | TRIP12 | SLC16A14 | 2 | 2 | -1 | -1 | 5 | 4 | 4 | 0.29 | 230723488 | 230902247 | tier1 | In-frame | 18689 | NA | 0 |
| KIRC | TCGA-BP-4977-01A | TCGA-BP-4977 | TRIP12|SLC16A14 | TRIP12 | SLC16A14 | 2 | 2 | -1 | -1 | 16 | 30 | 26 | 0.29 | 230723488 | 230902247 | tier1 | In-frame | 18687 | non-validated | 0 |
| KIRC | TCGA-CJ-4923-01A | TCGA-CJ-4923 | TRIP12|SLC16A14 | TRIP12 | SLC16A14 | 2 | 2 | -1 | -1 | 23 | 25 | 22 | 0.29 | 230723488 | 230902247 | tier1 | In-frame | 18688 | NA | 0 |
| LUAD | TCGA-95-A4VP-01A | TCGA-95-A4VP | TRIP12|SLC16A14 | TRIP12 | SLC16A14 | 2 | 2 | -1 | -1 | 11 | 5 | 5 | 0.29 | 230723488 | 230902247 | tier4 | In-frame | 18686 | NA | 0 |
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