Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-63-A5MP-01A | TCGA-63-A5MP | PLD1|FNDC3B | PLD1 | FNDC3B | 3 | 3 | -1 | 1 | 2 | 1 | 1 | 1.7 | 171528189 | 171830242 | tier3 | 5UTR-5UTR | 12977 | NA | 0.37195 |
| PRAD | TCGA-Y6-A9XI-01A | TCGA-Y6-A9XI | PLD1|LMBR1 | PLD1 | LMBR1 | 3 | 7 | -1 | -1 | 10 | 6 | 6 | 0.084 | 171488985 | 156629579 | tier1 | NA | 12978 | NA | 0.36826 |
| LUAD | TCGA-67-3774-01A | TCGA-67-3774 | BAZ2A|ACVR1B | BAZ2A | ACVR1B | 12 | 12 | -1 | 1 | 14 | 11 | 11 | 0.41 | 57023909 | 52369049 | tier1 | 5UTR-5UTR | 1939 | NA | 0.38814 |
| BLCA | TCGA-HQ-A2OE-01A | TCGA-HQ-A2OE | BAZ2A|PRIM1 | BAZ2A | PRIM1 | 12 | 12 | -1 | -1 | 10 | 4 | 4 | 0.46 | 57003520 | 57128029 | tier1 | In-frame | 1944 | NA | 0.36757 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | BAZ2A|PRIM1 | BAZ2A | PRIM1 | 12 | 12 | -1 | -1 | 38 | 51 | 48 | 0.46 | 57006799 | 57128029 | tier1 | In-frame | 1943 | NA | 0.36757 |
| LUSC | TCGA-60-2709-01A | TCGA-60-2709 | BAZ2A|PRIM1 | BAZ2A | PRIM1 | 12 | 12 | -1 | -1 | 3 | 3 | 3 | 0.46 | 57008798 | 57128029 | tier1 | In-frame | 1942 | NA | 0.36757 |
| LUAD | TCGA-49-6745-01A | TCGA-49-6745 | BAZ2A|BIN2 | BAZ2A | BIN2 | 12 | 12 | -1 | -1 | 25 | 31 | 27 | 0.7 | 57023909 | 51686128 | tier1 | 5UTR-CDS | 1940 | NA | 0.36615 |
| STAD | TCGA-VQ-AA6D-01A | TCGA-VQ-AA6D | BAZ2A|NACA | BAZ2A | NACA | 12 | 12 | -1 | -1 | 3 | 75 | 42 | 0.17 | 57023909 | 57119237 | tier1 | NA | 1941 | NA | 0.37515 |
| LIHC | TCGA-DD-A1EK-01A | TCGA-DD-A1EK | PTPN23|KLHL18 | PTPN23 | KLHL18 | 3 | 3 | 1 | 1 | 6 | 3 | 3 | 0.25 | 47422670 | 47371441 | tier1 | Out-of-frame | 13832 | NA | 0.35798 |
| LUAD | TCGA-55-A48Y-01A | TCGA-55-A48Y | PTPN23|KLHL18 | PTPN23 | KLHL18 | 3 | 3 | 1 | 1 | 6 | 1 | 1 | 0.25 | 47437707 | 47361143 | tier4 | In-frame | 13831 | NA | 0.35798 |
| LIHC | TCGA-BW-A5NO-01A | TCGA-BW-A5NO | PTPN23|CCDC14 | PTPN23 | CCDC14 | 3 | 3 | 1 | -1 | 22 | 9 | 9 | 0.035 | 47437707 | 123616460 | tier1 | NA | 13828 | non-validated | 0.35742 |
| PRAD | TCGA-HC-7078-01A | TCGA-HC-7078 | PTPN23|ICA1L | PTPN23 | ICA1L | 3 | 2 | 1 | -1 | 14 | 15 | 15 | 3.4 | 47422670 | 203661687 | tier1 | Out-of-frame | 13829 | NA | 0.35177 |
| SKCM | TCGA-ER-A19T-06A | TCGA-ER-A19T | PTPN23|ISY1 | PTPN23 | ISY1 | 3 | 3 | 1 | -1 | 7 | 1 | 1 | 0.075 | 47422670 | 128878019 | tier2 | In-frame | 13830 | non-validated | 0.34569 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | PTPN23|RTP3 | PTPN23 | RTP3 | 3 | 3 | 1 | 1 | 6 | 4 | 4 | 0.25 | 47437707 | 46541846 | tier1 | Out-of-frame | 13833 | NA | 0.34234 |
| BRCA | TCGA-AN-A0XP-01A | TCGA-AN-A0XP | ACACB|UNG | ACACB | UNG | 12 | 12 | 1 | 1 | 2 | 4 | 4 | 0.2 | 109665294 | 109547634 | tier3 | Out-of-frame | 238 | NA | 0.35764 |
| COAD | TCGA-D5-5537-01A | TCGA-D5-5537 | ACACB|UNG | ACACB | UNG | 12 | 12 | 1 | 1 | 4 | 3 | 2 | 0.2 | 109665294 | 109547634 | tier1 | Out-of-frame | 240 | NA | 0.35764 |
| READ | TCGA-EF-5830-01A | TCGA-EF-5830 | ACACB|UNG | ACACB | UNG | 12 | 12 | 1 | 1 | 11 | 9 | 7 | 0.2 | 109665294 | 109547634 | tier1 | Out-of-frame | 242 | NA | 0.35764 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | ACACB|MARCH9 | ACACB | MARCH9 | 12 | 12 | 1 | 1 | 14 | 12 | 12 | 0.023 | 109675185 | 58150712 | tier1 | In-frame | 237 | NA | 0 |
| SKCM | TCGA-BF-AAP6-01A | TCGA-BF-AAP6 | ACACB|UNG | ACACB | UNG | 12 | 12 | 1 | 1 | 14 | 27 | 25 | 0.2 | 109665294 | 109547634 | tier1 | Out-of-frame | 239 | NA | 0.35764 |
| SKCM | TCGA-EB-A44O-01A | TCGA-EB-A44O | ACACB|UNG | ACACB | UNG | 12 | 12 | 1 | 1 | 45 | 39 | 31 | 0.2 | 109665294 | 109547634 | tier1 | Out-of-frame | 241 | NA | 0.35764 |
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