Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A8-A09E-01A | TCGA-A8-A09E | AHNAK|RPS6KA4 | AHNAK | RPS6KA4 | 11 | 11 | -1 | 1 | 11 | 8 | 8 | 0.17 | 62259204 | 64132773 | tier1 | Out-of-frame | 693 | NA | 0.38548 |
| SKCM | TCGA-ER-A19W-06A | TCGA-ER-A19W | FCHSD2|TPCN2 | FCHSD2 | TPCN2 | 11 | 11 | -1 | 1 | 37 | 31 | 27 | 0.76 | 72613588 | 68825046 | tier1 | In-frame | 6408 | NA | 0.36895 |
| BRCA | TCGA-A2-A3Y0-01A | TCGA-A2-A3Y0 | SPTBN2|FGF19 | SPTBN2 | FGF19 | 11 | 11 | -1 | -1 | 30 | 28 | 25 | 0.2 | 66453869 | 69514344 | tier1 | In-frame | 16797 | non-validated | 0 |
| HNSC | TCGA-CQ-6224-01A | TCGA-CQ-6224 | ALG8|FGF19 | ALG8 | FGF19 | 11 | 11 | -1 | -1 | 7 | 3 | 3 | 0.51 | 77835067 | 69514344 | tier1 | Out-of-frame | 837 | NA | 0.35015 |
| BRCA | TCGA-A8-A09G-01A | TCGA-A8-A09G | BCAS3|PRKAA2 | BCAS3 | PRKAA2 | 17 | 1 | 1 | 1 | 21 | 8 | 7 | 4.2 | 58885437 | 57140054 | tier1 | Out-of-frame | 1988 | NA | 0.37677 |
| BRCA | TCGA-C8-A12Q-01A | TCGA-C8-A12Q | ACOT7|KLHL21 | ACOT7 | KLHL21 | 1 | 1 | -1 | -1 | 2 | 5 | 5 | 0.56 | 6378552 | 6655617 | tier2 | Out-of-frame | 285 | non-validated | 0.34855 |
| LUSC | TCGA-46-3769-01A | TCGA-46-3769 | AFAP1|SLC45A1 | AFAP1 | SLC45A1 | 4 | 1 | -1 | 1 | 20 | 13 | 12 | 0.22 | 7802169 | 8384366 | tier1 | CDS-5UTR | 575 | NA | 0.36793 |
| BLCA | TCGA-DK-AA6R-01A | TCGA-DK-AA6R | ALG14|JAK1 | ALG14 | JAK1 | 1 | 1 | -1 | -1 | 13 | 3 | 3 | 2.2 | 95492685 | 65313358 | tier1 | In-frame | 833 | NA | 0.37894 |
| KIRP | TCGA-DZ-6131-01A | TCGA-DZ-6131 | SPEN|CTRC | SPEN | CTRC | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 4.8 | 16199631 | 15768943 | tier3 | In-frame | 16709 | NA | 0 |
| BRCA | TCGA-BH-A1EV-01A | TCGA-BH-A1EV | KIRREL|RBP7 | KIRREL | RBP7 | 1 | 1 | 1 | 1 | 6 | 12 | 12 | 2.5 | 157963518 | 10075840 | tier1 | Out-of-frame | 9025 | NA | 0.37027 |
| LUSC | TCGA-56-8082-01A | TCGA-56-8082 | UBE4B|RBP7 | UBE4B | RBP7 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.58 | 10093752 | 10068231 | tier3 | In-frame | 19118 | NA | 0 |
| OV | TCGA-13-1510-01A | TCGA-13-1510 | UBE4B|RBP7 | UBE4B | RBP7 | 1 | 1 | 1 | 1 | 3 | 12 | 12 | 0.58 | 10132272 | 10067628 | tier1 | In-frame | 19116 | NA | 0 |
| THYM | TCGA-4V-A9QJ-01A | TCGA-4V-A9QJ | UBE4B|RBP7 | UBE4B | RBP7 | 1 | 1 | 1 | 1 | 148 | 63 | 52 | 0.58 | 10093752 | 10075840 | tier1 | In-frame | 19117 | NA | 0 |
| LIHC | TCGA-CC-5258-01A | TCGA-CC-5258 | CAMSAP1L1|DHRS3 | CAMSAP1L1 | DHRS3 | 1 | 1 | 1 | -1 | 33 | 17 | 16 | 0.45 | 200730226 | 12640694 | tier1 | In-frame | 2943 | NA | 0.3504 |
| LUSC | TCGA-46-3769-01A | TCGA-46-3769 | CAMTA1|DHRS3 | CAMTA1 | DHRS3 | 1 | 1 | 1 | -1 | 19 | 47 | 42 | 0.12 | 6845635 | 12640694 | tier1 | In-frame | 2944 | NA | 0.36003 |
| SARC | TCGA-HB-A2OT-01A | TCGA-HB-A2OT | C1orf183|DHRS3 | C1orf183 | DHRS3 | 1 | 1 | -1 | -1 | 56 | 45 | 43 | 0.37 | 112281808 | 12640694 | tier1 | In-frame | 2596 | NA | 0 |
| SARC | TCGA-DX-A23U-01A | TCGA-DX-A23U | DAB1|OMA1 | DAB1 | OMA1 | 1 | 1 | -1 | -1 | 25 | 12 | 12 | 5.2 | 57602216 | 58946846 | tier1 | In-frame | 4527 | NA | 0.37705 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | RAB3B|MYSM1 | RAB3B | MYSM1 | 1 | 1 | -1 | -1 | 4 | 2 | 2 | 0.29 | 52398990 | 59131303 | tier1 | Out-of-frame | 14079 | NA | 0 |
| SARC | TCGA-DX-AB3A-01A | TCGA-DX-AB3A | GPRIN1|TM2D1 | GPRIN1 | TM2D1 | 5 | 1 | -1 | -1 | 6 | 16 | 16 | 0.19 | 176037000 | 62166697 | tier1 | 5UTR-CDS | 7385 | NA | 0.35104 |
| BRCA | TCGA-EW-A2FW-01A | TCGA-EW-A2FW | FAM69A|NTNG1 | FAM69A | NTNG1 | 1 | 1 | -1 | 1 | 5 | 6 | 4 | 5.2 | 93426933 | 108023233 | tier1 | Out-of-frame | 6200 | NA | 0.34222 |
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