Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-7744-01A | TCGA-HC-7744 | ZNF395|SLC25A44 | ZNF395 | SLC25A44 | 8 | 1 | -1 | 1 | 8 | 16 | 10 | 0.6 | 28243521 | 156177677 | tier1 | 5UTR-CDS | 20482 | non-validated | 0 |
| BRCA | TCGA-EW-A2FR-01A | TCGA-EW-A2FR | CIC|LMNA | CIC | LMNA | 19 | 1 | 1 | 1 | 2 | 8 | 7 | 0.051 | 42798456 | 156084592 | tier3 | CDS-5UTR | 3731 | NA | 0.38047 |
| LGG | TCGA-TM-A84J-01A | TCGA-TM-A84J | SORL1|LMNA | SORL1 | LMNA | 11 | 1 | 1 | 1 | 12 | 6 | 4 | 4.3 | 121367758 | 156104194 | tier1 | In-frame | 16601 | NA | 0 |
| HNSC | TCGA-CN-6018-01A | TCGA-CN-6018 | SMURF1|AZGP1 | SMURF1 | AZGP1 | 7 | 7 | -1 | -1 | 20 | 6 | 6 | 0.003 | 98741349 | 99569629 | tier1 | In-frame | 16440 | NA | 0 |
| PAAD | TCGA-IB-AAUS-01A | TCGA-IB-AAUS | ANKIB1|CYP3A4 | ANKIB1 | CYP3A4 | 7 | 7 | 1 | -1 | 7 | 2 | 2 | 1.8 | 92021606 | 99359890 | tier1 | In-frame | 928 | NA | 0.3568 |
| BRCA | TCGA-AN-A04A-01A | TCGA-AN-A04A | SH3GL1|MUM1 | SH3GL1 | MUM1 | 19 | 19 | -1 | 1 | 2 | 4 | 4 | 0.37 | 4400321 | 1356323 | tier2 | CDS-5UTR | 15822 | NA | 0 |
| LUAD | TCGA-67-6217-01A | TCGA-67-6217 | AP3D1|MUM1 | AP3D1 | MUM1 | 19 | 19 | -1 | 1 | 2 | 2 | 1 | 0.21 | 2108686 | 1356323 | tier2 | CDS-5UTR | 1094 | NA | 0.3563 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | CUX1|EMID2 | CUX1 | EMID2 | 7 | 7 | 1 | 1 | 4 | 48 | 44 | 1.5 | 101559505 | 101176363 | tier1 | Out-of-frame | 4450 | NA | 0.37576 |
| OV | TCGA-25-1326-01A | TCGA-25-1326 | DNAJC2|PSMC2 | DNAJC2 | PSMC2 | 7 | 7 | -1 | 1 | 3 | 12 | 12 | 4 | 102978183 | 102996141 | tier1 | In-frame | 4940 | NA | 0.36599 |
| SKCM | TCGA-GN-A8LN-01A | TCGA-GN-A8LN | FZR1|C19orf28 | FZR1 | C19orf28 | 19 | 19 | 1 | -1 | 4 | 22 | 16 | 0.084 | 3506472 | 3551192 | tier1 | 5UTR-CDS | 6863 | NA | 0 |
| CESC | TCGA-VS-A959-01A | TCGA-VS-A959 | DLG1|BDH1 | DLG1 | BDH1 | 3 | 3 | -1 | -1 | 6 | 2 | 2 | 2.2 | 196817783 | 197239235 | tier1 | Out-of-frame | 4870 | NA | 0.37972 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | DLG1|BDH1 | DLG1 | BDH1 | 3 | 3 | -1 | -1 | 13 | 57 | 51 | 2.2 | 197009550 | 197249652 | tier1 | In-frame | 4868 | NA | 0.37972 |
| HNSC | TCGA-P3-A5QA-01A | TCGA-P3-A5QA | DLG1|BDH1 | DLG1 | BDH1 | 3 | 3 | -1 | -1 | 34 | 39 | 36 | 2.2 | 197023217 | 197241287 | tier1 | In-frame | 4869 | NA | 0.37972 |
| LUSC | TCGA-66-2771-01A | TCGA-66-2771 | DLG1|BDH1 | DLG1 | BDH1 | 3 | 3 | -1 | -1 | 4 | 6 | 6 | 2.2 | 197009550 | 197273357 | tier1 | CDS-5UTR | 4867 | NA | 0.37972 |
| SARC | TCGA-X6-A7W8-01A | TCGA-X6-A7W8 | C17orf63|PRPSAP1 | C17orf63 | PRPSAP1 | 17 | 17 | -1 | -1 | 17 | 8 | 8 | 0.095 | 27139227 | 74309972 | tier1 | 5UTR-CDS | 2519 | NA | 0 |
| BRCA | TCGA-D8-A1XD-01A | TCGA-D8-A1XD | PIH1D1|ALDH16A1 | PIH1D1 | ALDH16A1 | 19 | 19 | -1 | 1 | 41 | 59 | 46 | 1.7 | 49954742 | 49961743 | tier1 | In-frame | 12827 | NA | 0.36789 |
| BRCA | TCGA-AC-A5XU-01A | TCGA-AC-A5XU | TAF2|ALDH16A1 | TAF2 | ALDH16A1 | 8 | 19 | -1 | 1 | 51 | 16 | 16 | 0.16 | 120843917 | 49967111 | tier1 | In-frame | 17322 | NA | 0 |
| LUSC | TCGA-63-A5MI-01A | TCGA-63-A5MI | POLR3K|C19orf63 | POLR3K | C19orf63 | 16 | 19 | -1 | 1 | 6 | 3 | 2 | 1.2 | 103476 | 50981186 | tier1 | In-frame | 13183 | NA | 0 |
| BRCA | TCGA-C8-A12Q-01A | TCGA-C8-A12Q | DCAKD|PLCD3 | DCAKD | PLCD3 | 17 | 17 | -1 | -1 | 3 | 2 | 2 | 0.26 | 43138256 | 43198739 | tier1 | 5UTR-CDS | 4590 | non-validated | 0.35509 |
| BRCA | TCGA-D8-A27L-01A | TCGA-D8-A27L | UBR5|SSTR5 | UBR5 | SSTR5 | 8 | 16 | -1 | 1 | 7 | 16 | 13 | 0.28 | 103424401 | 1128842 | tier1 | CDS-5UTR | 19154 | NA | 0 |
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