Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-EE-A2GH-06A | TCGA-EE-A2GH | AC113191.1|LSS | AC113191.1 | LSS | 8 | 21 | 1 | -1 | 8 | 4 | 4 | 0.083 | 42958973 | 47616181 | tier1 | Out-of-frame | 216 | NA | 0.33855 |
| BRCA | TCGA-B6-A0I9-01A | TCGA-B6-A0I9 | FSD1L|ADAMTS13 | FSD1L | ADAMTS13 | 9 | 9 | 1 | 1 | 31 | 11 | 9 | 4.7 | 108210516 | 136313720 | tier1 | Out-of-frame | 6808 | NA | 0.35348 |
| LGG | TCGA-S9-A7J0-01A | TCGA-S9-A7J0 | PHLPP1|ADAMTS13 | PHLPP1 | ADAMTS13 | 18 | 9 | 1 | 1 | 11 | 2 | 1 | 0.32 | 60384492 | 136288221 | tier3 | Out-of-frame | 12758 | NA | 0.34659 |
| BLCA | TCGA-CU-A0YN-01A | TCGA-CU-A0YN | ZNF606|RDH13 | ZNF606 | RDH13 | 19 | 19 | -1 | -1 | 7 | 4 | 3 | 0.13 | 58499575 | 55575780 | tier1 | CDS-5UTR | 20584 | NA | 0 |
| LIHC | TCGA-G3-A7M7-01A | TCGA-G3-A7M7 | CREB3L3|PKN3 | CREB3L3 | PKN3 | 19 | 9 | 1 | 1 | 19 | 12 | 12 | 0.31 | 4171172 | 131467582 | tier1 | In-frame | 4194 | NA | 0.37328 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | RHPN2|BRSK1 | RHPN2 | BRSK1 | 19 | 19 | -1 | 1 | 7 | 15 | 13 | 0.12 | 33555690 | 55798375 | tier1 | Out-of-frame | 14664 | NA | 0 |
| BRCA | TCGA-E2-A14V-01A | TCGA-E2-A14V | SPOP|TAOK1 | SPOP | TAOK1 | 17 | 17 | -1 | 1 | 9 | 24 | 23 | 0.042 | 47679227 | 27869579 | tier1 | Out-of-frame | 16765 | NA | 0 |
| BRCA | TCGA-A8-A09G-01A | TCGA-A8-A09G | ARHGEF12|SIK3 | ARHGEF12 | SIK3 | 11 | 11 | 1 | -1 | 25 | 42 | 39 | 0.18 | 120207984 | 116827780 | tier1 | Out-of-frame | 1300 | NA | 0.37819 |
| LUSC | TCGA-43-7657-01A | TCGA-43-7657 | CWF19L2|AMICA1 | CWF19L2 | AMICA1 | 11 | 11 | -1 | -1 | 5 | 1 | 1 | 0.23 | 107286935 | 118076706 | tier3 | Out-of-frame | 4469 | NA | 0.3497 |
| LUAD | TCGA-69-A59K-01A | TCGA-69-A59K | TLCD1|NEK8 | TLCD1 | NEK8 | 17 | 17 | -1 | 1 | 5 | 4 | 3 | 0.1 | 27052922 | 27061001 | tier1 | In-frame | 17851 | NA | 0 |
| OV | TCGA-24-1431-01A | TCGA-24-1431 | C17orf63|NEK8 | C17orf63 | NEK8 | 17 | 17 | -1 | 1 | 152 | 58 | 50 | 0.12 | 27093604 | 27061001 | tier1 | Out-of-frame | 2517 | NA | 0 |
| LUAD | TCGA-44-7667-01A | TCGA-44-7667 | FXYD6|CD3G | FXYD6 | CD3G | 11 | 11 | -1 | 1 | 3 | 1 | 1 | 0.21 | 117747307 | 118219742 | tier3 | 5UTR-CDS | 6848 | NA | 0.36165 |
| BLCA | TCGA-HQ-A5ND-01A | TCGA-HQ-A5ND | EFHD2|CXCR5 | EFHD2 | CXCR5 | 1 | 11 | 1 | 1 | 2 | 12 | 9 | 0.39 | 15756826 | 118754475 | tier3 | 3UTR-5UTR | 5349 | NA | 0.35889 |
| BRCA | TCGA-E9-A22B-01A | TCGA-E9-A22B | CCT2|CXCR5 | CCT2 | CXCR5 | 12 | 11 | 1 | 1 | 2 | 1 | 1 | 1.2 | 69995350 | 118754475 | tier3 | 3UTR-5UTR | 3246 | NA | 0.37331 |
| DLBC | TCGA-GR-A4D9-01B | TCGA-GR-A4D9 | ACTG1|CXCR5 | ACTG1 | CXCR5 | 17 | 11 | -1 | 1 | 2 | 10 | 3 | 0.086 | 79476999 | 118754475 | tier4 | 3UTR-5UTR | 360 | NA | 0.37431 |
| HNSC | TCGA-CV-A6JZ-01A | TCGA-CV-A6JZ | KRT6A|CXCR5 | KRT6A | CXCR5 | 12 | 11 | -1 | 1 | 2 | 53 | 38 | 0.1 | 52880958 | 118754475 | tier3 | 3UTR-5UTR | 9157 | NA | 0.36417 |
| HNSC | TCGA-CV-5978-01A | TCGA-CV-5978 | S100A2|CXCR5 | S100A2 | CXCR5 | 1 | 11 | -1 | 1 | 2 | 92 | 9 | 0.045 | 153533819 | 118754475 | tier3 | 3UTR-5UTR | 15225 | NA | 0 |
| LUAD | TCGA-78-7539-01A | TCGA-78-7539 | CNPY3|CXCR5 | CNPY3 | CXCR5 | 6 | 11 | 1 | 1 | 2 | 1 | 1 | 0.27 | 42907007 | 118754475 | tier4 | 3UTR-5UTR | 3941 | NA | 0.3489 |
| PRAD | TCGA-J9-A8CL-01A | TCGA-J9-A8CL | CBL|CXCR5 | CBL | CXCR5 | 11 | 11 | 1 | 1 | 5 | 3 | 3 | 0.13 | 119103405 | 118764305 | tier1 | Out-of-frame | 3070 | NA | 0.38594 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | PGS1|CXCR5 | PGS1 | CXCR5 | 17 | 11 | 1 | 1 | 10 | 7 | 6 | 0.34 | 76395618 | 118764305 | tier1 | Out-of-frame | 12673 | NA | 0.35066 |
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