Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-7077-01A | TCGA-HC-7077 | HDLBP|SPON2 | HDLBP | SPON2 | 2 | 4 | -1 | -1 | 3 | 1 | 1 | 0.12 | 242168877 | 1198876 | tier4 | NA | 7653 | NA | 0.36227 |
| LIHC | TCGA-DD-AAW2-01A | TCGA-DD-AAW2 | HINT2|NPR2 | HINT2 | NPR2 | 9 | 9 | -1 | 1 | 3 | 4 | 3 | 0.081 | 35814896 | 35805508 | tier4 | In-frame | 7767 | NA | 0.35614 |
| OV | TCGA-13-0768-01A | TCGA-13-0768 | CHERP|CPAMD8 | CHERP | CPAMD8 | 19 | 19 | -1 | -1 | 3 | 4 | 4 | 0.073 | 16652681 | 17017927 | tier1 | Out-of-frame | 3661 | NA | 0.36115 |
| PRAD | TCGA-YJ-A8SW-01A | TCGA-YJ-A8SW | EPS15L1|CPAMD8 | EPS15L1 | CPAMD8 | 19 | 19 | -1 | -1 | 16 | 31 | 29 | 0.65 | 16582724 | 17049256 | tier1 | In-frame | 5706 | NA | 0.36506 |
| LIHC | TCGA-2Y-A9GZ-01A | TCGA-2Y-A9GZ | ZNF7|KALRN | ZNF7 | KALRN | 8 | 3 | 1 | 1 | 13 | 18 | 15 | 3.9 | 146054989 | 124113982 | tier1 | Out-of-frame | 20630 | NA | 0 |
| LUSC | TCGA-60-2704-01A | TCGA-60-2704 | DCBLD2|KALRN | DCBLD2 | KALRN | 3 | 3 | -1 | 1 | 2 | 5 | 5 | 0.056 | 98568305 | 124193510 | tier2 | Out-of-frame | 4595 | NA | 0.37226 |
| LUSC | TCGA-60-2710-01A | TCGA-60-2710 | ECT2|KALRN | ECT2 | KALRN | 3 | 3 | 1 | 1 | 20 | 10 | 10 | 0.14 | 172491812 | 124065990 | tier1 | In-frame | 5265 | NA | 0.38116 |
| LUSC | TCGA-85-8277-01A | TCGA-85-8277 | RASA2|KALRN | RASA2 | KALRN | 3 | 3 | 1 | 1 | 12 | 8 | 8 | 0.051 | 141206058 | 124017638 | tier1 | Out-of-frame | 14355 | non-validated | 0 |
| SARC | TCGA-WP-A9GB-01A | TCGA-WP-A9GB | USP48|KALRN | USP48 | KALRN | 1 | 3 | -1 | 1 | 9 | 15 | 14 | 0.51 | 22027991 | 124281690 | tier1 | In-frame | 19402 | validated | 0 |
| UCEC | TCGA-A5-A1OH-01A | TCGA-A5-A1OH | HMGA2|KALRN | HMGA2 | KALRN | 12 | 3 | 1 | 1 | 32 | 15 | 13 | 3.1 | 66345195 | 124281690 | tier1 | In-frame | 7860 | NA | 0.37865 |
| BRCA | TCGA-AO-A129-01A | TCGA-AO-A129 | PLOD2|ABCG1 | PLOD2 | ABCG1 | 3 | 21 | -1 | 1 | 4 | 5 | 5 | 1.6 | 145824319 | 43645781 | tier1 | In-frame | 13041 | NA | 0.35685 |
| PAAD | TCGA-3E-AAAY-01A | TCGA-3E-AAAY | UBE2G2|ABCG1 | UBE2G2 | ABCG1 | 21 | 21 | -1 | 1 | 28 | 18 | 18 | 1.3 | 46207835 | 43704670 | tier1 | In-frame | 19072 | NA | 0 |
| PRAD | TCGA-WW-A8ZI-01A | TCGA-WW-A8ZI | MRPL44|ABCG1 | MRPL44 | ABCG1 | 2 | 21 | 1 | 1 | 2 | 4 | 4 | 0.22 | 224824719 | 43645781 | tier2 | In-frame | 10663 | NA | 0.36226 |
| STAD | TCGA-BR-A4CS-01A | TCGA-BR-A4CS | C21orf63|ABCG1 | C21orf63 | ABCG1 | 21 | 21 | 1 | 1 | 3 | 29 | 26 | 0.25 | 33785321 | 43691180 | tier1 | In-frame | 2657 | NA | 0 |
| PRAD | TCGA-HC-7738-01A | TCGA-HC-7738 | TSPAN1|TFF3 | TSPAN1 | TFF3 | 1 | 21 | 1 | -1 | 3 | 21 | 7 | 0.77 | 46651630 | 43735706 | tier1 | 3UTR-5UTR | 18783 | NA | 0 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | ZNF295|TFF1 | ZNF295 | TFF1 | 21 | 21 | -1 | -1 | 37 | 94 | 83 | 0.14 | 43423006 | 43783516 | tier1 | 5UTR-CDS | 20449 | validated | 0 |
| BLCA | TCGA-2F-A9KP-01A | TCGA-2F-A9KP | PKNOX1|PDE9A | PKNOX1 | PDE9A | 21 | 21 | 1 | 1 | 3 | 1 | 1 | 1.3 | 44394774 | 44174100 | tier3 | 5UTR-CDS | 12925 | NA | 0.36054 |
| UCEC | TCGA-AX-A3G6-01A | TCGA-AX-A3G6 | AGPAT3|PDE9A | AGPAT3 | PDE9A | 21 | 21 | 1 | 1 | 17 | 14 | 11 | 0.42 | 45323900 | 44106302 | tier1 | 5UTR-CDS | 655 | NA | 0.35012 |
| BRCA | TCGA-A8-A07O-01A | TCGA-A8-A07O | AGPAT3|PDXK | AGPAT3 | PDXK | 21 | 21 | 1 | 1 | 8 | 26 | 25 | 1.5 | 45323900 | 45153950 | tier1 | 5UTR-CDS | 656 | NA | 0.33908 |
| STAD | TCGA-CD-8535-01A | TCGA-CD-8535 | AGPAT3|PDXK | AGPAT3 | PDXK | 21 | 21 | 1 | 1 | 4 | 65 | 45 | 1.5 | 45323900 | 45153950 | tier1 | 5UTR-CDS | 657 | NA | 0.33908 |
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