Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-05-4420-01A | TCGA-05-4420 | DOPEY2|CBR3 | DOPEY2 | CBR3 | 21 | 21 | 1 | 1 | 3 | 2 | 2 | 1.1 | 37571549 | 37510123 | tier1 | Out-of-frame | 5055 | non-validated | 0.34993 |
| PRAD | TCGA-KK-A6E1-01A | TCGA-KK-A6E1 | C21orf63|CBR3 | C21orf63 | CBR3 | 21 | 21 | 1 | 1 | 10 | 17 | 17 | 1 | 33825816 | 37518374 | tier1 | Out-of-frame | 2659 | NA | 0 |
| SKCM | TCGA-WE-A8K4-01A | TCGA-WE-A8K4 | DOPEY2|CBR3 | DOPEY2 | CBR3 | 21 | 21 | 1 | 1 | 14 | 8 | 5 | 1.1 | 37586854 | 37510123 | tier1 | In-frame | 5056 | NA | 0.34993 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | SIM2|MORC3 | SIM2 | MORC3 | 21 | 21 | 1 | 1 | 3 | 12 | 10 | 2.3 | 38103452 | 37721609 | tier1 | Out-of-frame | 15931 | validated | 0 |
| PRAD | TCGA-KK-A8IL-01A | TCGA-KK-A8IL | NEDD4L|MORC3 | NEDD4L | MORC3 | 18 | 21 | 1 | 1 | 5 | 7 | 7 | 1.3 | 55833093 | 37728918 | tier1 | In-frame | 11338 | NA | 0.37925 |
| LIHC | TCGA-UB-A7ME-01A | TCGA-UB-A7ME | CCDC64|HLCS | CCDC64 | HLCS | 12 | 21 | 1 | -1 | 2 | 1 | 1 | 2.5 | 120527875 | 38139586 | tier2 | Out-of-frame | 3176 | NA | 0.34318 |
| PRAD | TCGA-HC-7078-01A | TCGA-HC-7078 | SCAF4|HLCS | SCAF4 | HLCS | 21 | 21 | -1 | -1 | 4 | 1 | 1 | 0.28 | 33103976 | 38139586 | tier2 | Out-of-frame | 15364 | NA | 0 |
| SARC | TCGA-HB-A43Z-01A | TCGA-HB-A43Z | TBCD|HLCS | TBCD | HLCS | 17 | 21 | 1 | -1 | 70 | 33 | 27 | 0.084 | 80888519 | 38139586 | tier1 | In-frame | 17519 | validated | 0 |
| BRCA | TCGA-AC-A8OP-01A | TCGA-AC-A8OP | TTLL12|SCUBE1 | TTLL12 | SCUBE1 | 22 | 22 | -1 | -1 | 3 | 1 | 1 | 1.6 | 43572326 | 43634960 | tier3 | Out-of-frame | 18901 | NA | 0 |
| HNSC | TCGA-CN-6020-01A | TCGA-CN-6020 | MIRLET7BHG|SCUBE1 | MIRLET7BHG | SCUBE1 | 22 | 22 | 1 | -1 | 23 | 17 | 17 | 0.004 | 46499129 | 43735241 | tier1 | Out-of-frame | 10391 | NA | 0.35332 |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | PEMT|SCUBE1 | PEMT | SCUBE1 | 17 | 22 | -1 | -1 | 6 | 5 | 5 | 0.14 | 17480234 | 43654341 | tier1 | Out-of-frame | 12606 | NA | 0.35663 |
| UCS | TCGA-N5-A4RD-01A | TCGA-N5-A4RD | DENND1A|SCUBE1 | DENND1A | SCUBE1 | 9 | 22 | -1 | -1 | 3 | 4 | 3 | 0.057 | 126554866 | 43735241 | tier1 | Out-of-frame | 4701 | NA | 0.35481 |
| MESO | TCGA-TS-A7OZ-01A | TCGA-TS-A7OZ | MGA|PLA2G4D | MGA | PLA2G4D | 15 | 15 | 1 | -1 | 2 | 3 | 2 | 0.13 | 42042813 | 42373331 | tier2 | In-frame | 10301 | NA | 0.34917 |
| BRCA | TCGA-E9-A22E-01A | TCGA-E9-A22E | ADIPOR1|CYB5R1 | ADIPOR1 | CYB5R1 | 1 | 1 | -1 | -1 | 8 | 24 | 21 | 0.13 | 202927313 | 202932855 | tier1 | 5UTR-CDS | 505 | NA | 0.35184 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | CBFB|NAE1 | CBFB | NAE1 | 16 | 16 | 1 | -1 | 2 | 25 | 23 | 0.74 | 67070658 | 66857503 | tier4 | In-frame | 3069 | NA | 0.36667 |
| ESCA | TCGA-VR-A8Q7-01A | TCGA-VR-A8Q7 | DYNC1LI2|NAE1 | DYNC1LI2 | NAE1 | 16 | 16 | -1 | -1 | 22 | 446 | 399 | 0.31 | 66783100 | 66839929 | tier1 | In-frame | 5216 | NA | 0.36403 |
| BRCA | TCGA-AO-A129-01A | TCGA-AO-A129 | OSBPL5|GPR114 | OSBPL5 | GPR114 | 11 | 16 | -1 | 1 | 2 | 2 | 2 | 0.15 | 3140777 | 57595968 | tier3 | CDS-5UTR | 12082 | NA | 0.34954 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | FAM135A|GPR114 | FAM135A | GPR114 | 6 | 16 | 1 | 1 | 4 | 4 | 4 | 0.86 | 71212494 | 57595968 | tier1 | CDS-5UTR | 6054 | NA | 0.34978 |
| LUAD | TCGA-95-7948-01A | TCGA-95-7948 | GTF2E2|ACE | GTF2E2 | ACE | 8 | 17 | -1 | 1 | 6 | 7 | 5 | 0.25 | 30510950 | 61561691 | tier2 | Out-of-frame | 7516 | NA | 0.36608 |
| SARC | TCGA-FX-A3TO-01A | TCGA-FX-A3TO | PLXDC1|ACE | PLXDC1 | ACE | 17 | 17 | -1 | 1 | 14 | 12 | 12 | 0.26 | 37307615 | 61566009 | tier1 | In-frame | 13054 | NA | 0.35849 |
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