Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-QQ-A5VA-01A | TCGA-QQ-A5VA | ANO6|EDA | ANO6 | EDA | 12 | X | 1 | 1 | 20 | 6 | 6 | 1.1 | 45797319 | 69080688 | tier1 | Out-of-frame | 1033 | NA | 0.35857 |
| BRCA | TCGA-A7-A6VY-01A | TCGA-A7-A6VY | NCALD|SLC5A11 | NCALD | SLC5A11 | 8 | 16 | -1 | 1 | 4 | 2 | 2 | 0.37 | 102803090 | 24873922 | tier1 | 5UTR-CDS | 11138 | NA | 0.36569 |
| LIHC | TCGA-BW-A5NQ-01A | TCGA-BW-A5NQ | C5orf45|APOA2 | C5orf45 | APOA2 | 5 | 1 | -1 | -1 | 10 | 1 | 1 | 0.83 | 179263802 | 161193418 | tier4 | 3UTR-5UTR | 2739 | non-validated | 0 |
| LIHC | TCGA-DD-AACJ-01A | TCGA-DD-AACJ | C5orf45|APOA2 | C5orf45 | APOA2 | 5 | 1 | -1 | -1 | 7 | 2 | 1 | 0.83 | 179263802 | 161193418 | tier4 | 3UTR-5UTR | 2740 | NA | 0 |
| LIHC | TCGA-ZS-A9CE-01A | TCGA-ZS-A9CE | C5orf45|APOA2 | C5orf45 | APOA2 | 5 | 1 | -1 | -1 | 4 | 2 | 1 | 0.83 | 179263802 | 161193418 | tier4 | 3UTR-5UTR | 2741 | NA | 0 |
| LIHC | TCGA-CC-5263-01A | TCGA-CC-5263 | PFDN2|APOA2 | PFDN2 | APOA2 | 1 | 1 | -1 | -1 | 431 | 348 | 330 | 100 | 161087742 | 161192840 | tier1 | Out-of-frame | 12637 | NA | 0.35219 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | MEF2D|APOA2 | MEF2D | APOA2 | 1 | 1 | -1 | -1 | 474 | 316 | 268 | 0.002 | 156470278 | 161193215 | tier1 | 5UTR-5UTR | 10237 | NA | 0.37828 |
| UCS | TCGA-NF-A4WU-01A | TCGA-NF-A4WU | SP1|WNT9B | SP1 | WNT9B | 12 | 17 | 1 | 1 | 3 | 1 | 1 | 0.39 | 53777406 | 44949883 | tier2 | Out-of-frame | 16634 | NA | 0 |
| BRCA | TCGA-A8-A06R-01A | TCGA-A8-A06R | INADL|CACHD1 | INADL | CACHD1 | 1 | 1 | 1 | 1 | 4 | 17 | 16 | 5.7 | 62393501 | 65113484 | tier1 | In-frame | 8221 | NA | 0.37236 |
| SKCM | TCGA-EB-A82C-01A | TCGA-EB-A82C | AHDC1|CACHD1 | AHDC1 | CACHD1 | 1 | 1 | -1 | 1 | 6 | 4 | 4 | 1.2 | 27929908 | 65113484 | tier1 | 5UTR-CDS | 682 | NA | 0.35476 |
| SKCM | TCGA-EB-A551-01A | TCGA-EB-A551 | CNN3|CACHD1 | CNN3 | CACHD1 | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 0.12 | 95392394 | 65047839 | tier2 | In-frame | 3917 | NA | 0.35763 |
| STAD | TCGA-BR-4366-01A | TCGA-BR-4366 | TARBP1|CACHD1 | TARBP1 | CACHD1 | 1 | 1 | -1 | 1 | 4 | 8 | 8 | 0.08 | 234593413 | 65047839 | tier1 | In-frame | 17416 | NA | 0 |
| BLCA | TCGA-ZF-AA5P-01A | TCGA-ZF-AA5P | MAN1A1|IFNGR2 | MAN1A1 | IFNGR2 | 6 | 21 | -1 | 1 | 2 | 5 | 5 | 0.032 | 119623153 | 34851105 | tier3 | NA | 9799 | NA | 0.36345 |
| BRCA | TCGA-D8-A1XF-01A | TCGA-D8-A1XF | RCAN1|GART | RCAN1 | GART | 21 | 21 | -1 | -1 | 15 | 9 | 7 | 0.35 | 35987059 | 34871404 | tier1 | NA | 14499 | NA | 0 |
| LIHC | TCGA-BC-A10R-01A | TCGA-BC-A10R | TMEM50B|GART | TMEM50B | GART | 21 | 21 | -1 | -1 | 7 | 2 | 2 | 0.29 | 34852145 | 34883765 | tier1 | 5UTR-CDS | 18031 | NA | 0 |
| LUAD | TCGA-55-A493-01A | TCGA-55-A493 | UBE2G2|GART | UBE2G2 | GART | 21 | 21 | -1 | -1 | 36 | 14 | 13 | 1.3 | 46197214 | 34897307 | tier1 | In-frame | 19073 | NA | 0 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | DNAJC28|GART | DNAJC28 | GART | 21 | 21 | -1 | -1 | 11 | 11 | 9 | 0.058 | 34863909 | 34878411 | tier1 | 5UTR-CDS | 4945 | NA | 0.35408 |
| SARC | TCGA-DX-AB2O-01A | TCGA-DX-AB2O | UBR4|C1QC | UBR4 | C1QC | 1 | 1 | -1 | 1 | 48 | 41 | 39 | 0.19 | 19447683 | 22973720 | tier1 | In-frame | 19147 | NA | 0 |
| BRCA | TCGA-C8-A275-01A | TCGA-C8-A275 | C17orf63|GIP | C17orf63 | GIP | 17 | 17 | -1 | -1 | 2 | 2 | 2 | 1.3 | 27093604 | 47044615 | tier2 | CDS-5UTR | 2513 | NA | 0 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | SCRN2|GIP | SCRN2 | GIP | 17 | 17 | -1 | -1 | 15 | 9 | 6 | 0.56 | 45915636 | 47041842 | tier1 | Out-of-frame | 15441 | NA | 0 |
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