Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-A7NN-01A | TCGA-EJ-A7NN | FLYWCH2|SLC37A3 | FLYWCH2 | SLC37A3 | 16 | 7 | 1 | -1 | 2 | 5 | 4 | 1.5 | 2933367 | 140037149 | tier3 | 5UTR-CDS | 6577 | NA | 0.34396 |
| PRAD | TCGA-YL-A8HO-01A | TCGA-YL-A8HO | LARP4|HPD | LARP4 | HPD | 12 | 12 | 1 | -1 | 4 | 15 | 11 | 1.5 | 50824353 | 122285120 | tier1 | In-frame | 9234 | NA | 0.34165 |
| BRCA | TCGA-AO-A126-01A | TCGA-AO-A126 | C16orf45|RHBDL2 | C16orf45 | RHBDL2 | 16 | 1 | 1 | -1 | 3 | 7 | 5 | 0.59 | 15528616 | 39385009 | tier1 | CDS-5UTR | 2479 | NA | 0 |
| LUSC | TCGA-33-4587-01A | TCGA-33-4587 | MACF1|RHBDL2 | MACF1 | RHBDL2 | 1 | 1 | 1 | -1 | 36 | 19 | 14 | 0.51 | 39571389 | 39385009 | tier1 | NA | 9734 | NA | 0.36911 |
| UCS | TCGA-N6-A4VG-01A | TCGA-N6-A4VG | RRAGC|RHBDL2 | RRAGC | RHBDL2 | 1 | 1 | -1 | -1 | 3 | 1 | 1 | 2.5 | 39317287 | 39377106 | tier3 | In-frame | 15114 | NA | 0 |
| KIRC | TCGA-BP-5175-01A | TCGA-BP-5175 | PAIP2|CDC25C | PAIP2 | CDC25C | 5 | 5 | 1 | -1 | 47 | 8 | 7 | 2.1 | 138677669 | 137627805 | tier1 | 5UTR-CDS | 12196 | NA | 0.37448 |
| LUAD | TCGA-44-4112-01A | TCGA-44-4112 | CDC23|CDC25C | CDC23 | CDC25C | 5 | 5 | -1 | -1 | 2 | 2 | 2 | 2.9 | 137536796 | 137627805 | tier2 | In-frame | 3319 | non-validated | 0.37947 |
| PRAD | TCGA-CH-5740-01A | TCGA-CH-5740 | FAM13B|CDC25C | FAM13B | CDC25C | 5 | 5 | -1 | -1 | 4 | 5 | 4 | 0.41 | 137368471 | 137627805 | tier1 | 5UTR-CDS | 6056 | NA | 0.37228 |
| UCEC | TCGA-PG-A5BC-01A | TCGA-PG-A5BC | DDX46|CDC25C | DDX46 | CDC25C | 5 | 5 | 1 | -1 | 13 | 8 | 7 | 0.43 | 134094645 | 137666907 | tier1 | CDS-5UTR | 4666 | NA | 0.37908 |
| ESCA | TCGA-VR-A8EQ-01A | TCGA-VR-A8EQ | RALGAPB|KCNB1 | RALGAPB | KCNB1 | 20 | 20 | 1 | -1 | 5 | 100 | 95 | 0.19 | 37128276 | 47991529 | tier1 | Out-of-frame | 14230 | NA | 0 |
| LGG | TCGA-TM-A84H-01A | TCGA-TM-A84H | TRPC4AP|KCNB1 | TRPC4AP | KCNB1 | 20 | 20 | -1 | -1 | 5 | 4 | 4 | 0.84 | 33657099 | 47991529 | tier1 | In-frame | 18720 | NA | 0 |
| BRCA | TCGA-BH-A0H9-01A | TCGA-BH-A0H9 | SIL1|NRG2 | SIL1 | NRG2 | 5 | 5 | -1 | -1 | 54 | 57 | 51 | 0.073 | 138456724 | 139267096 | tier1 | In-frame | 15923 | NA | 0 |
| COAD | TCGA-CM-4747-01A | TCGA-CM-4747 | TNPO3|AHCYL2 | TNPO3 | AHCYL2 | 7 | 7 | -1 | 1 | 33 | 21 | 20 | 2.4 | 128694705 | 129019482 | tier1 | In-frame | 18369 | NA | 0 |
| LUSC | TCGA-22-5480-01A | TCGA-22-5480 | CUX1|AHCYL2 | CUX1 | AHCYL2 | 7 | 7 | 1 | 1 | 22 | 13 | 11 | 2.5 | 101459373 | 129019482 | tier1 | In-frame | 4445 | NA | 0.37302 |
| SARC | TCGA-DX-A1KX-01A | TCGA-DX-A1KX | FAM180A|AHCYL2 | FAM180A | AHCYL2 | 7 | 7 | -1 | 1 | 14 | 14 | 14 | 0.002 | 135421847 | 129019479 | tier1 | In-frame | 6112 | NA | 0.34535 |
| SKCM | TCGA-EE-A2MF-06A | TCGA-EE-A2MF | ATP5L|AHCYL2 | ATP5L | AHCYL2 | 11 | 7 | 1 | 1 | 145 | 86 | 80 | 3.4 | 118272432 | 129019482 | tier1 | Out-of-frame | 1739 | NA | 0.34781 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | RP11-574F21.3|CD1C | RP11-574F21.3 | CD1C | 1 | 1 | -1 | 1 | 10 | 7 | 6 | 0.019 | 160206925 | 158260924 | tier1 | Out-of-frame | 14942 | non-validated | 0 |
| ACC | TCGA-OR-A5JY-01A | TCGA-OR-A5JY | CREB3L2|CPA2 | CREB3L2 | CPA2 | 7 | 7 | -1 | 1 | 73 | 51 | 43 | 0.1 | 137686350 | 129921944 | tier1 | In-frame | 4192 | NA | 0.35224 |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | NHS|F11R | NHS | F11R | X | 1 | 1 | -1 | 20 | 10 | 9 | 5.1 | 17394445 | 160971143 | tier1 | In-frame | 11534 | validated | 0.37626 |
| BLCA | TCGA-HQ-A2OE-01A | TCGA-HQ-A2OE | SSBP3|EDA | SSBP3 | EDA | 1 | X | -1 | 1 | 8 | 34 | 33 | 0.009 | 54867534 | 69080688 | tier1 | In-frame | 16909 | NA | 0 |
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