Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-63-A5MP-01A | TCGA-63-A5MP | THAP7|NRG1 | THAP7 | NRG1 | 22 | 8 | -1 | 1 | 9 | 7 | 1 | 0.47 | 21354936 | 32453346 | tier2 | Out-of-frame | 17763 | NA | 0 |
| OV | TCGA-04-1362-01A | TCGA-04-1362 | RAB3IL1|NRG1 | RAB3IL1 | NRG1 | 11 | 8 | -1 | 1 | 17 | 5 | 5 | 0.073 | 61669914 | 32585467 | tier1 | Out-of-frame | 14091 | NA | 0 |
| SARC | TCGA-DX-AB3A-01A | TCGA-DX-AB3A | CUEDC1|LRP8 | CUEDC1 | LRP8 | 17 | 1 | -1 | -1 | 7 | 7 | 7 | 0.35 | 55956972 | 53746387 | tier1 | Out-of-frame | 4428 | NA | 0.3734 |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | AARS|ST3GAL2 | AARS | ST3GAL2 | 16 | 16 | -1 | -1 | 72 | 47 | 45 | 0.64 | 70303521 | 70415765 | tier1 | Out-of-frame | 17 | non-validated | 0.35205 |
| LIHC | TCGA-DD-AAE2-01A | TCGA-DD-AAE2 | DDX19B|ST3GAL2 | DDX19B | ST3GAL2 | 16 | 16 | 1 | -1 | 2 | 2 | 1 | 0.62 | 70333257 | 70433436 | tier3 | CDS-5UTR | 4653 | NA | 0.3588 |
| CESC | TCGA-VS-A8EC-01A | TCGA-VS-A8EC | ZFHX3|IL34 | ZFHX3 | IL34 | 16 | 16 | -1 | 1 | 4 | 2 | 2 | 0.024 | 72984368 | 70680451 | tier1 | CDS-5UTR | 20259 | NA | 0 |
| PRAD | TCGA-V1-A9ZR-01A | TCGA-V1-A9ZR | NUP85|IL34 | NUP85 | IL34 | 17 | 16 | 1 | 1 | 2 | 1 | 1 | 0.51 | 73222252 | 70680451 | tier2 | CDS-5UTR | 11943 | NA | 0.35638 |
| PRAD | TCGA-EJ-5516-01A | TCGA-EJ-5516 | HGD|CACNA1D | HGD | CACNA1D | 3 | 3 | -1 | 1 | 10 | 12 | 11 | 0.045 | 120389274 | 53777038 | tier1 | In-frame | 7731 | NA | 0.36471 |
| STAD | TCGA-D7-A74A-01A | TCGA-D7-A74A | DNAH1|CACNA1D | DNAH1 | CACNA1D | 3 | 3 | 1 | 1 | 2 | 3 | 2 | 0.002 | 52418047 | 53834276 | tier3 | In-frame | 4919 | NA | 0.36182 |
| PRAD | TCGA-EJ-7327-01A | TCGA-EJ-7327 | RCOR1|KIT | RCOR1 | KIT | 14 | 4 | 1 | 1 | 2 | 2 | 2 | 1.1 | 103148315 | 55561678 | tier3 | In-frame | 14514 | NA | 0 |
| UVM | TCGA-V4-A9F7-01A | TCGA-V4-A9F7 | OCIAD1|KIT | OCIAD1 | KIT | 4 | 4 | 1 | 1 | 37 | 40 | 29 | 0.35 | 48859382 | 55589750 | tier1 | In-frame | 11998 | NA | 0.38564 |
| BLCA | TCGA-UY-A9PE-01A | TCGA-UY-A9PE | TTC23L|CACNA2D3 | TTC23L | CACNA2D3 | 5 | 3 | 1 | 1 | 2 | 1 | 1 | 0.18 | 34850413 | 54615830 | tier2 | Out-of-frame | 18835 | NA | 0 |
| LGG | TCGA-DU-A7TA-01A | TCGA-DU-A7TA | PDHB|CACNA2D3 | PDHB | CACNA2D3 | 3 | 3 | -1 | 1 | 8 | 1 | 1 | 0.2 | 58419358 | 54354469 | tier3 | In-frame | 12532 | NA | 0.34633 |
| SARC | TCGA-LI-A9QH-01A | TCGA-LI-A9QH | PDZRN3|CACNA2D3 | PDZRN3 | CACNA2D3 | 3 | 3 | -1 | 1 | 5 | 5 | 5 | 0.56 | 73651505 | 54420742 | tier1 | In-frame | 12588 | NA | 0.37357 |
| THCA | TCGA-E8-A432-01A | TCGA-E8-A432 | IFT74|CACNA2D3 | IFT74 | CACNA2D3 | 9 | 3 | 1 | 1 | 11 | 5 | 3 | 0.081 | 26990193 | 55038790 | tier1 | In-frame | 8075 | NA | 0.33698 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | ICOSLG|KCNJ6 | ICOSLG | KCNJ6 | 21 | 21 | -1 | -1 | 2 | 4 | 4 | 2.2 | 45649937 | 39087434 | tier2 | In-frame | 8051 | validated | 0.3564 |
| LGG | TCGA-DU-6406-01A | TCGA-DU-6406 | SIM2|KCNJ6 | SIM2 | KCNJ6 | 21 | 21 | 1 | -1 | 40 | 23 | 21 | 1.4 | 38072221 | 39213011 | tier1 | CDS-5UTR | 15930 | NA | 0 |
| LUAD | TCGA-50-5944-01A | TCGA-50-5944 | WRB|KCNJ15 | WRB | KCNJ15 | 21 | 21 | 1 | 1 | 8 | 1 | 1 | 0.58 | 40782863 | 39668848 | tier2 | 3UTR-5UTR | 19906 | NA | 0 |
| LAML | TCGA-AB-2814-03A | TCGA-AB-2814 | HNRNPH1|ERG | HNRNPH1 | ERG | 5 | 21 | -1 | -1 | 178 | 217 | 208 | 8 | 179047893 | 39755845 | tier4 | In-frame | 7894 | NA | 0.3819 |
| PAAD | TCGA-3E-AAAY-01A | TCGA-3E-AAAY | WRB|ERG | WRB | ERG | 21 | 21 | 1 | -1 | 12 | 9 | 6 | 0.083 | 40752412 | 39817544 | tier1 | In-frame | 19905 | NA | 0 |
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