TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
SARC	TCGA-DX-A8BG-01A	TCGA-DX-A8BG	ATG2B\|TDRD9	ATG2B	TDRD9	14	14	-1	1	2	1	1	0.16	96788877	104441726	tier2	In-frame	1623	NA	0.35186
BLCA	TCGA-FD-A3SJ-01A	TCGA-FD-A3SJ	TSNARE1\|GDF6	TSNARE1	GDF6	8	8	-1	-1	2	1	1	0.079	143356142	97157752	tier3	Out-of-frame	18780	NA	0
BLCA	TCGA-FD-A6TK-01A	TCGA-FD-A6TK	MIRLET7BHG\|HKDC1	MIRLET7BHG	HKDC1	22	10	1	1	29	15	14	0.6	46494438	71025341	tier1	In-frame	10390	NA	0.34058
BRCA	TCGA-A8-A09N-01A	TCGA-A8-A09N	LRRC20\|NODAL	LRRC20	NODAL	10	10	-1	-1	8	6	6	0.7	72100309	72195739	tier1	In-frame	9567	NA	0.34698
LUAD	TCGA-44-7660-01A	TCGA-44-7660	SAMD8\|KAT6B	SAMD8	KAT6B	10	10	1	1	8	6	6	0.014	76928416	76788247	tier1	Out-of-frame	15298	NA	0
BRCA	TCGA-BH-A0WA-01A	TCGA-BH-A0WA	AL109749.1\|AIFM1	AL109749.1	AIFM1	X	X	1	-1	2	2	2	0.92	131157687	129290577	tier3	Out-of-frame	768	non-validated	0.35822
BLCA	TCGA-4Z-AA7Q-01A	TCGA-4Z-AA7Q	C8orf76\|ATAD2	C8orf76	ATAD2	8	8	-1	-1	8	4	4	0.076	124238740	124335306	tier1	In-frame	2807	NA	0
KIRC	TCGA-BP-4962-01A	TCGA-BP-4962	C8orf76\|ATAD2	C8orf76	ATAD2	8	8	-1	-1	2	4	4	0.076	124250038	124351686	tier3	In-frame	2808	NA	0
LUAD	TCGA-55-A48Y-01A	TCGA-55-A48Y	ZHX1\|ATAD2	ZHX1	ATAD2	8	8	-1	-1	11	7	6	0.007	124286362	124351686	tier1	5UTR-CDS	20305	NA	0
LUSC	TCGA-63-A5MB-01A	TCGA-63-A5MB	WDYHV1\|ATAD2	WDYHV1	ATAD2	8	8	1	-1	2	1	1	1	124429096	124361684	tier2	5UTR-CDS	19823	NA	0
PRAD	TCGA-HC-7233-01A	TCGA-HC-7233	C8orf76\|ATAD2	C8orf76	ATAD2	8	8	-1	-1	2	2	2	0.076	124253470	124361684	tier4	Out-of-frame	2809	non-validated	0
LUSC	TCGA-94-7557-01A	TCGA-94-7557	C11orf84\|BUB1B	C11orf84	BUB1B	11	15	1	1	2	2	1	0.94	63581285	40468678	tier2	Out-of-frame	2402	NA	0
BRCA	TCGA-EW-A1P0-01A	TCGA-EW-A1P0	GNB5\|PDE6D	GNB5	PDE6D	15	2	-1	-1	34	12	8	1.6	52433337	232603912	tier2	NA	7224	NA	0.37092
HNSC	TCGA-CV-7418-01A	TCGA-CV-7418	SRGAP3\|ATP2B2	SRGAP3	ATP2B2	3	3	-1	-1	2	1	1	0.065	9290569	10491546	tier3	CDS-5UTR	16848	NA	0
BRCA	TCGA-S3-AA0Z-01A	TCGA-S3-AA0Z	PARN\|SMG1	PARN	SMG1	16	16	-1	-1	7	8	8	0.003	14645878	18849788	tier1	In-frame	12297	NA	0.36914
OV	TCGA-04-1341-01A	TCGA-04-1341	RNF11\|C8A	RNF11	C8A	1	1	1	1	30	47	42	3.1	51702551	57347118	tier1	Out-of-frame	14727	NA	0
BRCA	TCGA-EW-A1P0-01A	TCGA-EW-A1P0	AKAP13\|NRG1	AKAP13	NRG1	15	8	1	1	13	8	3	1.5	86087186	32453346	tier1	Out-of-frame	732	NA	0.38959
KIRC	TCGA-B8-5553-01A	TCGA-B8-5553	PCM1\|NRG1	PCM1	NRG1	8	8	1	1	11	6	5	0.99	17782289	32611890	tier1	5UTR-CDS	12406	NA	0.37805
LIHC	TCGA-DD-AAD0-01A	TCGA-DD-AAD0	WRN\|NRG1	WRN	NRG1	8	8	1	1	2	5	5	0.048	31024746	32585467	tier2	Out-of-frame	19910	NA	0
LUSC	TCGA-63-A5MP-01A	TCGA-63-A5MP	SMAD4\|NRG1	SMAD4	NRG1	18	8	1	1	16	12	11	0.98	48556993	32585467	tier1	5UTR-CDS	16347	NA	0

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