Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A2-A25F-01A | TCGA-A2-A25F | CELSR1|MAFF | CELSR1 | MAFF | 22 | 22 | -1 | 1 | 3 | 4 | 3 | 0.083 | 46768780 | 38609830 | tier1 | CDS-5UTR | 3510 | NA | 0.36968 |
| HNSC | TCGA-CV-6941-01A | TCGA-CV-6941 | CELSR1|PACSIN2 | CELSR1 | PACSIN2 | 22 | 22 | -1 | -1 | 7 | 4 | 4 | 0.11 | 46859604 | 43308163 | tier1 | CDS-5UTR | 3511 | NA | 0.36957 |
| LUSC | TCGA-46-6025-01A | TCGA-46-6025 | CELSR1|SEZ6L | CELSR1 | SEZ6L | 22 | 22 | -1 | 1 | 378 | 251 | 235 | 0.22 | 46929524 | 26688372 | tier1 | In-frame | 3512 | NA | 0.36634 |
| SKCM | TCGA-EE-A29V-06A | TCGA-EE-A29V | CELSR1|C10orf93 | CELSR1 | C10orf93 | 22 | 10 | -1 | -1 | 98 | 98 | 88 | 0.28 | 46929524 | 134628418 | tier1 | In-frame | 3506 | NA | 0 |
| SKCM | TCGA-D3-A2JO-06A | TCGA-D3-A2JO | CELSR1|KIAA1644 | CELSR1 | KIAA1644 | 22 | 22 | -1 | -1 | 5 | 5 | 4 | 0.23 | 46929524 | 44696857 | tier1 | CDS-5UTR | 3509 | NA | 0.3618 |
| UCS | TCGA-ND-A4WC-01A | TCGA-ND-A4WC | CELSR1|TRMU | CELSR1 | TRMU | 22 | 22 | -1 | 1 | 2 | 2 | 2 | 0.064 | 46780440 | 46751341 | tier3 | Out-of-frame | 3513 | NA | 0.36293 |
| PRAD | TCGA-XK-AAJA-01A | TCGA-XK-AAJA | SLC25A40|ADAM22 | SLC25A40 | ADAM22 | 7 | 7 | -1 | 1 | 4 | 4 | 4 | 0.11 | 87476264 | 87822431 | tier1 | Out-of-frame | 16114 | NA | 0 |
| LUSC | TCGA-43-5668-01A | TCGA-43-5668 | MARK3|FBLN5 | MARK3 | FBLN5 | 14 | 14 | 1 | -1 | 16 | 4 | 4 | 0.09 | 103871604 | 92361416 | tier1 | Out-of-frame | 10007 | NA | 0.38387 |
| BRCA | TCGA-GM-A2DD-01A | TCGA-GM-A2DD | MARK3|SLC25A21 | MARK3 | SLC25A21 | 14 | 14 | 1 | -1 | 2 | 4 | 4 | 1.3 | 103941547 | 37344209 | tier4 | Out-of-frame | 10009 | NA | 0.38088 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | MARK3|BAG5 | MARK3 | BAG5 | 14 | 14 | 1 | -1 | 4 | 3 | 2 | 2.2 | 103934523 | 104027529 | tier1 | CDS-5UTR | 10004 | NA | 0.38136 |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | MARK3|BAG5 | MARK3 | BAG5 | 14 | 14 | 1 | -1 | 4 | 3 | 3 | 2.2 | 103894777 | 104027529 | tier1 | CDS-5UTR | 10003 | NA | 0.38136 |
| BRCA | TCGA-B6-A0I9-01A | TCGA-B6-A0I9 | MARK3|RP11-407N17.3 | MARK3 | RP11-407N17.3 | 14 | 14 | 1 | 1 | 4 | 1 | 1 | 2 | 103852417 | 39716115 | tier2 | In-frame | 10008 | NA | 0.37909 |
| LUSC | TCGA-85-A53L-01A | TCGA-85-A53L | MARK3|EIF5 | MARK3 | EIF5 | 14 | 14 | 1 | 1 | 53 | 28 | 25 | 0.22 | 103871604 | 103801990 | tier1 | CDS-5UTR | 10005 | NA | 0.38169 |
| LUSC | TCGA-18-3411-01A | TCGA-18-3411 | MARK3|ENTPD5 | MARK3 | ENTPD5 | 14 | 14 | 1 | -1 | 2 | 2 | 2 | 9.3 | 103946827 | 74482633 | tier2 | CDS-5UTR | 10006 | NA | 0.38041 |
| KIRC | TCGA-A3-3317-01A | TCGA-A3-3317 | SLC25A3|SIAE | SLC25A3 | SIAE | 12 | 11 | 1 | -1 | 2 | 5 | 5 | 1.3 | 98995485 | 124543777 | tier3 | 3UTR-5UTR | 16107 | NA | 0 |
| SKCM | TCGA-BF-A1Q0-01A | TCGA-BF-A1Q0 | SLC25A3|DDX27 | SLC25A3 | DDX27 | 12 | 20 | 1 | 1 | 2 | 48 | 45 | 100 | 98995485 | 47849303 | tier3 | NA | 16106 | NA | 0 |
| BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | CACNG4|C17orf51 | CACNG4 | C17orf51 | 17 | 17 | 1 | -1 | 3 | 1 | 1 | 0.023 | 64961247 | 21438799 | tier2 | In-frame | 2880 | validated | 0 |
| BRCA | TCGA-C8-A12M-01A | TCGA-C8-A12M | CACNG4|VMP1 | CACNG4 | VMP1 | 17 | 17 | 1 | 1 | 9 | 6 | 5 | 0.91 | 64961247 | 57812699 | tier1 | In-frame | 2882 | NA | 0.33756 |
| PAAD | TCGA-2L-AAQE-01A | TCGA-2L-AAQE | CACNG4|VMP1 | CACNG4 | VMP1 | 17 | 17 | 1 | 1 | 25 | 16 | 16 | 0.91 | 64961247 | 57851115 | tier1 | Out-of-frame | 2881 | NA | 0.33756 |
| STAD | TCGA-VQ-AA6B-01A | TCGA-VQ-AA6B | PLD1|SLC7A14 | PLD1 | SLC7A14 | 3 | 3 | -1 | -1 | 4 | 129 | 118 | 0.025 | 171338176 | 170219134 | tier1 | In-frame | 12979 | NA | 0.36827 |
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