Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-FC-A4JI-01A | TCGA-FC-A4JI | RB1CC1|MMP16 | RB1CC1 | MMP16 | 8 | 8 | -1 | -1 | 3 | 2 | 1 | 0.018 | 53596109 | 89086971 | tier2 | In-frame | 14411 | NA | 0 |
| BLCA | TCGA-4Z-AA7Q-01A | TCGA-4Z-AA7Q | SAMD8|ADK | SAMD8 | ADK | 10 | 10 | 1 | 1 | 13 | 12 | 12 | 0.012 | 76871480 | 76468079 | tier1 | Out-of-frame | 15297 | NA | 0 |
| BRCA | TCGA-A8-A09N-01A | TCGA-A8-A09N | C10orf11|ADK | C10orf11 | ADK | 10 | 10 | 1 | 1 | 8 | 6 | 6 | 100 | 77198252 | 76285014 | tier1 | Out-of-frame | 2297 | NA | 0 |
| GBM | TCGA-28-5204-01A | TCGA-28-5204 | FAM149B1|ADK | FAM149B1 | ADK | 10 | 10 | 1 | 1 | 2 | 3 | 3 | 0.033 | 74970196 | 76349040 | tier2 | Out-of-frame | 6060 | NA | 0.34489 |
| HNSC | TCGA-CV-5978-01A | TCGA-CV-5978 | ADD1|ADK | ADD1 | ADK | 4 | 10 | 1 | 1 | 16 | 13 | 10 | 0.35 | 2845751 | 76153899 | tier2 | 5UTR-CDS | 492 | NA | 0.36917 |
| HNSC | TCGA-CV-7103-01A | TCGA-CV-7103 | DNAJC19|ADK | DNAJC19 | ADK | 3 | 10 | -1 | 1 | 39 | 71 | 48 | 0.003 | 180705811 | 76285014 | tier1 | In-frame | 4938 | NA | 0.34366 |
| HNSC | TCGA-4P-AA8J-01A | TCGA-4P-AA8J | SUFU|ADK | SUFU | ADK | 10 | 10 | 1 | 1 | 32 | 27 | 26 | 0.11 | 104309863 | 76468079 | tier1 | In-frame | 17160 | NA | 0 |
| LUSC | TCGA-22-5472-01A | TCGA-22-5472 | C10orf11|ADK | C10orf11 | ADK | 10 | 10 | 1 | 1 | 15 | 17 | 16 | 100 | 77198252 | 76468079 | tier4 | Out-of-frame | 2295 | NA | 0 |
| PCPG | TCGA-WB-A81S-01A | TCGA-WB-A81S | FAM160B1|ADK | FAM160B1 | ADK | 10 | 10 | 1 | 1 | 47 | 30 | 26 | 0.12 | 116593161 | 76349040 | tier1 | In-frame | 6071 | NA | 0.34774 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | USP54|ADK | USP54 | ADK | 10 | 10 | -1 | 1 | 3 | 3 | 3 | 0.13 | 75385695 | 76285014 | tier1 | NA | 19415 | NA | 0 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | C10orf11|ADK | C10orf11 | ADK | 10 | 10 | 1 | 1 | 20 | 21 | 18 | 100 | 77198252 | 76285014 | tier1 | Out-of-frame | 2296 | NA | 0 |
| UCEC | TCGA-D1-A3DH-01A | TCGA-D1-A3DH | C10orf11|ADK | C10orf11 | ADK | 10 | 10 | 1 | 1 | 6 | 1 | 1 | 100 | 77198252 | 76153899 | tier2 | Out-of-frame | 2298 | NA | 0 |
| UCS | TCGA-NA-A4QV-01A | TCGA-NA-A4QV | ZMIZ1|ADK | ZMIZ1 | ADK | 10 | 10 | 1 | 1 | 15 | 45 | 42 | 0.16 | 80829027 | 76468079 | tier1 | 5UTR-CDS | 20317 | NA | 0 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | FAM149B1|KCNMA1 | FAM149B1 | KCNMA1 | 10 | 10 | 1 | -1 | 11 | 17 | 17 | 1.3 | 74970196 | 78778857 | tier1 | Out-of-frame | 6061 | NA | 0.36581 |
| BRCA | TCGA-E2-A14Q-01A | TCGA-E2-A14Q | FRAS1|DCK | FRAS1 | DCK | 4 | 4 | 1 | 1 | 4 | 6 | 5 | 1.2 | 79373508 | 71888084 | tier1 | Out-of-frame | 6705 | NA | 0.35884 |
| LUSC | TCGA-66-2782-01A | TCGA-66-2782 | YTHDC1|ADAMTS3 | YTHDC1 | ADAMTS3 | 4 | 4 | -1 | -1 | 8 | 4 | 4 | 0.37 | 69202745 | 73176898 | tier1 | In-frame | 20046 | NA | 0 |
| BLCA | TCGA-ZF-AA4T-01A | TCGA-ZF-AA4T | AKAP13|ADAMTSL3 | AKAP13 | ADAMTSL3 | 15 | 15 | 1 | 1 | 2 | 2 | 2 | 0.29 | 85924029 | 84651025 | tier2 | 5UTR-CDS | 725 | NA | 0.38347 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | NEDD4|ADAMTSL3 | NEDD4 | ADAMTSL3 | 15 | 15 | -1 | 1 | 3 | 1 | 1 | 0.54 | 56243574 | 84373141 | tier2 | In-frame | 11330 | NA | 0.37987 |
| LGG | TCGA-TQ-A7RW-01A | TCGA-TQ-A7RW | RGMA|ADAMTSL3 | RGMA | ADAMTSL3 | 15 | 15 | -1 | 1 | 3 | 5 | 5 | 0.24 | 93632148 | 84581844 | tier1 | In-frame | 14630 | NA | 0 |
| LUSC | TCGA-46-3765-01A | TCGA-46-3765 | MCCC1|ADAMTSL3 | MCCC1 | ADAMTSL3 | 3 | 15 | -1 | 1 | 13 | 12 | 11 | 0.72 | 182817140 | 84558861 | tier1 | Out-of-frame | 10081 | NA | 0.35262 |
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