Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-EO-A3B1-01A | TCGA-EO-A3B1 | PPFIBP1|WNT7A | PPFIBP1 | WNT7A | 12 | 3 | 1 | -1 | 56 | 23 | 19 | 0.25 | 27677298 | 13860920 | tier1 | 5UTR-CDS | 13287 | NA | 0.36578 |
| BRCA | TCGA-AR-A0TZ-01A | TCGA-AR-A0TZ | EFHB|PLCL2 | EFHB | PLCL2 | 3 | 3 | -1 | 1 | 5 | 2 | 2 | 0.42 | 19977633 | 17131225 | tier1 | Out-of-frame | 5344 | NA | 0.36112 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | RAB5A|PLCL2 | RAB5A | PLCL2 | 3 | 3 | 1 | 1 | 90 | 44 | 42 | 0.38 | 19992553 | 17051166 | tier1 | CDS-5UTR | 14116 | NA | 0 |
| ACC | TCGA-OR-A5JP-01A | TCGA-OR-A5JP | MSI2|CA10 | MSI2 | CA10 | 17 | 17 | 1 | -1 | 12 | 7 | 7 | 0.26 | 55607085 | 50149753 | tier1 | In-frame | 10714 | NA | 0.34688 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | MSI2|CA10 | MSI2 | CA10 | 17 | 17 | 1 | -1 | 4 | 4 | 4 | 0.26 | 55339553 | 50008492 | tier1 | Out-of-frame | 10713 | NA | 0.34688 |
| BRCA | TCGA-C8-A12Q-01A | TCGA-C8-A12Q | RAB38|CA10 | RAB38 | CA10 | 11 | 17 | -1 | -1 | 24 | 20 | 18 | 0.049 | 87908351 | 50149753 | tier1 | In-frame | 14077 | non-validated | 0 |
| BRCA | TCGA-BH-A18U-01A | TCGA-BH-A18U | RHOT1|CA10 | RHOT1 | CA10 | 17 | 17 | 1 | -1 | 3 | 3 | 3 | 0.4 | 30469748 | 50149753 | tier2 | In-frame | 14659 | validated | 0 |
| COAD | TCGA-A6-5657-01A | TCGA-A6-5657 | BCAS3|CA10 | BCAS3 | CA10 | 17 | 17 | 1 | -1 | 4 | 2 | 2 | 1.5 | 58967132 | 49731097 | tier1 | In-frame | 1976 | NA | 0.34109 |
| COAD | TCGA-DM-A0XF-01A | TCGA-DM-A0XF | UBTF|CA10 | UBTF | CA10 | 17 | 17 | -1 | -1 | 3 | 4 | 3 | 0.049 | 42286720 | 50008492 | tier1 | Out-of-frame | 19160 | NA | 0 |
| LIHC | TCGA-ED-A97K-01A | TCGA-ED-A97K | SPOP|CA10 | SPOP | CA10 | 17 | 17 | -1 | -1 | 3 | 2 | 2 | 4.5 | 47755295 | 50008492 | tier4 | 5UTR-CDS | 16754 | NA | 0 |
| PRAD | TCGA-EJ-7781-01A | TCGA-EJ-7781 | UBE2D3|CA10 | UBE2D3 | CA10 | 4 | 17 | -1 | -1 | 87 | 165 | 148 | 0.48 | 103747642 | 49726615 | tier1 | In-frame | 19059 | NA | 0 |
| SKCM | TCGA-FS-A1ZK-06A | TCGA-FS-A1ZK | APPBP2|CA10 | APPBP2 | CA10 | 17 | 17 | -1 | -1 | 12 | 17 | 15 | 0.78 | 58577760 | 49711011 | tier1 | Out-of-frame | 1153 | validated | 0.35683 |
| SKCM | TCGA-FS-A1ZK-06A | TCGA-FS-A1ZK | RNF157|CA10 | RNF157 | CA10 | 17 | 17 | -1 | -1 | 45 | 38 | 34 | 0.17 | 74236234 | 49711011 | tier1 | Out-of-frame | 14774 | non-validated | 0 |
| BRCA | TCGA-A2-A0D2-01A | TCGA-A2-A0D2 | LMBR1|PTPRN2 | LMBR1 | PTPRN2 | 7 | 7 | -1 | -1 | 100 | 67 | 64 | 0.83 | 156589083 | 157341713 | tier1 | Out-of-frame | 9385 | validated | 0.35877 |
| BRCA | TCGA-AR-A24K-01A | TCGA-AR-A24K | LMBR1|PTPRN2 | LMBR1 | PTPRN2 | 7 | 7 | -1 | -1 | 54 | 65 | 59 | 0.83 | 156516806 | 157997965 | tier1 | In-frame | 9386 | NA | 0.35877 |
| CESC | TCGA-VS-A9UB-01A | TCGA-VS-A9UB | RBM33|PTPRN2 | RBM33 | PTPRN2 | 7 | 7 | 1 | -1 | 7 | 1 | 1 | 0.14 | 155465609 | 157997965 | tier2 | Out-of-frame | 14460 | NA | 0 |
| HNSC | TCGA-CR-7389-01A | TCGA-CR-7389 | UBE3C|PTPRN2 | UBE3C | PTPRN2 | 7 | 7 | 1 | -1 | 29 | 18 | 17 | 0.072 | 156932032 | 157997965 | tier1 | Out-of-frame | 19109 | NA | 0 |
| LUSC | TCGA-66-2758-01A | TCGA-66-2758 | TMEM87A|PTPRN2 | TMEM87A | PTPRN2 | 15 | 7 | -1 | -1 | 4 | 3 | 2 | 1.8 | 42565453 | 158109624 | tier1 | Out-of-frame | 18054 | NA | 0 |
| OV | TCGA-VG-A8LO-01A | TCGA-VG-A8LO | LMBR1|PTPRN2 | LMBR1 | PTPRN2 | 7 | 7 | -1 | -1 | 7 | 54 | 49 | 0.83 | 156516806 | 157691429 | tier1 | In-frame | 9388 | NA | 0.35877 |
| PRAD | TCGA-EJ-A8FU-01A | TCGA-EJ-A8FU | LMBR1|PTPRN2 | LMBR1 | PTPRN2 | 7 | 7 | -1 | -1 | 29 | 18 | 16 | 0.83 | 156549087 | 157396767 | tier1 | In-frame | 9387 | NA | 0.35877 |
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