Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 455 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-86-8075-01A | TCGA-86-8075 | NDUFV2|CHST9 | NDUFV2 | CHST9 | 18 | 18 | 1 | -1 | 9 | 32 | 26 | 0.074 | 9117901 | 24524330 | tier2 | Out-of-frame | 11312 | NA | 0.35573 |
| BRCA | TCGA-AO-A128-01A | TCGA-AO-A128 | GCFC1|ABI3BP | GCFC1 | ABI3BP | 21 | 3 | -1 | -1 | 10 | 2 | 2 | 0.023 | 34133370 | 100508360 | tier1 | Out-of-frame | 7008 | NA | 0.3464 |
| HNSC | TCGA-DQ-7589-01A | TCGA-DQ-7589 | TBC1D23|ABI3BP | TBC1D23 | ABI3BP | 3 | 3 | 1 | -1 | 2 | 2 | 2 | 0.25 | 100000691 | 100645325 | tier3 | In-frame | 17484 | NA | 0 |
| LUSC | TCGA-92-7341-01A | TCGA-92-7341 | DCBLD2|ABI3BP | DCBLD2 | ABI3BP | 3 | 3 | -1 | -1 | 21 | 19 | 17 | 0.01 | 98619966 | 100499053 | tier1 | In-frame | 4594 | NA | 0.35756 |
| SARC | TCGA-DX-A3U9-01A | TCGA-DX-A3U9 | MYL6|ABI3BP | MYL6 | ABI3BP | 12 | 3 | 1 | -1 | 2 | 3 | 3 | 1.2 | 56555359 | 100557308 | tier3 | 3UTR-CDS | 10923 | NA | 0.37326 |
| BLCA | TCGA-ZF-A9RL-01A | TCGA-ZF-A9RL | FAM164A|ANGPT1 | FAM164A | ANGPT1 | 8 | 8 | 1 | -1 | 4 | 5 | 5 | 0.057 | 79610748 | 108276579 | tier1 | In-frame | 6076 | NA | 0.37078 |
| BRCA | TCGA-C8-A12P-01A | TCGA-C8-A12P | ZFP41|ANGPT1 | ZFP41 | ANGPT1 | 8 | 8 | 1 | -1 | 5 | 2 | 1 | 0.21 | 144333510 | 108334356 | tier2 | 3UTR-CDS | 20272 | NA | 0 |
| SARC | TCGA-DX-AB2Z-01A | TCGA-DX-AB2Z | SPAG1|ANGPT1 | SPAG1 | ANGPT1 | 8 | 8 | 1 | -1 | 6 | 1 | 1 | 0.014 | 101245765 | 108359325 | tier3 | In-frame | 16645 | NA | 0 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | AC087465.1|ANGPT1 | AC087465.1 | ANGPT1 | 15 | 8 | -1 | -1 | 7 | 13 | 12 | 0.003 | 77544709 | 108359325 | tier1 | 5UTR-CDS | 199 | NA | 0.36763 |
| BRCA | TCGA-C8-A1HI-01A | TCGA-C8-A1HI | INO80|PRKCA | INO80 | PRKCA | 15 | 17 | -1 | 1 | 2 | 1 | 1 | 0.37 | 41371899 | 64728806 | tier3 | In-frame | 8235 | NA | 0.38231 |
| KIRC | TCGA-BP-4983-01A | TCGA-BP-4983 | UNK|PRKCA | UNK | PRKCA | 17 | 17 | 1 | 1 | 15 | 1 | 1 | 0.23 | 73781065 | 64492319 | tier3 | Out-of-frame | 19264 | NA | 0 |
| LUSC | TCGA-33-4587-01A | TCGA-33-4587 | IGF2BP3|PRKCA | IGF2BP3 | PRKCA | 7 | 17 | -1 | 1 | 2 | 11 | 6 | 0.86 | 23381683 | 64637473 | tier2 | In-frame | 8109 | NA | 0.38297 |
| LUSC | TCGA-43-2581-01A | TCGA-43-2581 | TANC2|PRKCA | TANC2 | PRKCA | 17 | 17 | 1 | 1 | 12 | 9 | 8 | 0.68 | 61151375 | 64683229 | tier4 | In-frame | 17380 | NA | 0 |
| BRCA | TCGA-BH-A1FM-01A | TCGA-BH-A1FM | MED13|ABCA9 | MED13 | ABCA9 | 17 | 17 | -1 | -1 | 5 | 5 | 3 | 0.057 | 60038949 | 67025368 | tier1 | Out-of-frame | 10166 | NA | 0.36239 |
| BRCA | TCGA-D8-A147-01A | TCGA-D8-A147 | SOBP|ABCA9 | SOBP | ABCA9 | 6 | 17 | 1 | -1 | 9 | 6 | 4 | 100 | 107854814 | 67008224 | tier1 | In-frame | 16571 | NA | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | ZNF146|ABCA9 | ZNF146 | ABCA9 | 19 | 17 | 1 | -1 | 20 | 10 | 8 | 0.021 | 36709097 | 66992155 | tier1 | 5UTR-CDS | 20369 | non-validated | 0 |
| BRCA | TCGA-A2-A0T1-01A | TCGA-A2-A0T1 | FBXL20|ABCA6 | FBXL20 | ABCA6 | 17 | 17 | -1 | -1 | 2 | 1 | 1 | 2 | 37557614 | 67124945 | tier2 | In-frame | 6300 | NA | 0.34373 |
| BLCA | TCGA-BT-A2LA-01A | TCGA-BT-A2LA | HELZ|ABCA10 | HELZ | ABCA10 | 17 | 17 | -1 | -1 | 3 | 2 | 2 | 0.021 | 65239900 | 67223426 | tier4 | 5UTR-5UTR | 7692 | non-validated | 0.35482 |
| LIHC | TCGA-PD-A5DF-01A | TCGA-PD-A5DF | TRIT1|ABCA10 | TRIT1 | ABCA10 | 1 | 17 | -1 | -1 | 6 | 1 | 1 | 0.039 | 40348990 | 67193263 | tier2 | Out-of-frame | 18695 | non-validated | 0 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | FOXK2|ABCA5 | FOXK2 | ABCA5 | 17 | 17 | 1 | -1 | 16 | 12 | 12 | 0.041 | 80542064 | 67273983 | tier1 | In-frame | 6652 | NA | 0.35264 |
|
Showing page 455 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.