Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | PLCXD2|CD96 | PLCXD2 | CD96 | 3 | 3 | 1 | 1 | 6 | 1 | 1 | 0.091 | 111451550 | 111342601 | tier3 | 3UTR-CDS | 12976 | NA | 0.34676 |
| LUSC | TCGA-33-4589-01A | TCGA-33-4589 | ELOVL5|SLC25A27 | ELOVL5 | SLC25A27 | 6 | 6 | -1 | 1 | 6 | 1 | 1 | 0.093 | 53213615 | 46649264 | tier2 | 5UTR-CDS | 5536 | NA | 0.34628 |
| BLCA | TCGA-4Z-AA7R-01A | TCGA-4Z-AA7R | MCM3|GPR110 | MCM3 | GPR110 | 6 | 6 | -1 | -1 | 3 | 5 | 3 | 0.18 | 52146843 | 46991953 | tier1 | Out-of-frame | 10096 | NA | 0.37722 |
| KIRP | TCGA-F9-A7Q0-01A | TCGA-F9-A7Q0 | ZFP106|GPR115 | ZFP106 | GPR115 | 15 | 6 | -1 | 1 | 81 | 64 | 64 | 4.1 | 42713259 | 47688945 | tier1 | CDS-3UTR | 20265 | NA | 0 |
| BLCA | TCGA-FD-A6TF-01A | TCGA-FD-A6TF | KPNA4|PTPRD | KPNA4 | PTPRD | 3 | 9 | -1 | -1 | 5 | 1 | 1 | 0.27 | 160283002 | 9574781 | tier3 | CDS-5UTR | 9106 | NA | 0.37005 |
| BLCA | TCGA-CF-A27C-01A | TCGA-CF-A27C | UNC13B|PTPRD | UNC13B | PTPRD | 9 | 9 | 1 | -1 | 2 | 4 | 3 | 0.65 | 35386290 | 8636844 | tier2 | Out-of-frame | 19240 | validated | 0 |
| KIRC | TCGA-B0-4688-01A | TCGA-B0-4688 | CCNY|PTPRD | CCNY | PTPRD | 10 | 9 | 1 | -1 | 24 | 10 | 6 | 0.034 | 35819171 | 10033790 | tier1 | CDS-5UTR | 3238 | NA | 0.36809 |
| LGG | TCGA-HT-A5RC-01A | TCGA-HT-A5RC | MOBKL2B|PTPRD | MOBKL2B | PTPRD | 9 | 9 | -1 | -1 | 4 | 1 | 1 | 0.67 | 27359032 | 9766851 | tier2 | CDS-5UTR | 10567 | NA | 0.36835 |
| LIHC | TCGA-2Y-A9H6-01A | TCGA-2Y-A9H6 | ZBTB20|PTPRD | ZBTB20 | PTPRD | 3 | 9 | -1 | -1 | 2 | 2 | 2 | 0.11 | 114519948 | 8733946 | tier3 | 5UTR-5UTR | 20097 | NA | 0 |
| LUSC | TCGA-58-8392-01A | TCGA-58-8392 | CENPP|PTPRD | CENPP | PTPRD | 9 | 9 | 1 | -1 | 3 | 3 | 3 | 0.91 | 95142141 | 10341017 | tier1 | CDS-5UTR | 3528 | NA | 0.36637 |
| PRAD | TCGA-KK-A7AQ-01A | TCGA-KK-A7AQ | KDM4C|PTPRD | KDM4C | PTPRD | 9 | 9 | 1 | -1 | 2 | 3 | 1 | 0.48 | 6990524 | 10341017 | tier2 | CDS-5UTR | 8686 | NA | 0.36486 |
| BRCA | TCGA-AR-A1AK-01A | TCGA-AR-A1AK | S100P|CHD1 | S100P | CHD1 | 4 | 5 | 1 | -1 | 2 | 52 | 47 | 3.3 | 6698896 | 98219587 | tier3 | NA | 15253 | NA | 0 |
| HNSC | TCGA-CR-7373-01A | TCGA-CR-7373 | S100A2|CHD1 | S100A2 | CHD1 | 1 | 5 | -1 | -1 | 2 | 244 | 5 | 2.5 | 153533819 | 98219587 | tier4 | NA | 15224 | NA | 0 |
| KIRP | TCGA-BQ-5877-01A | TCGA-BQ-5877 | MAP4|CHD1 | MAP4 | CHD1 | 3 | 5 | -1 | -1 | 2 | 2 | 1 | 0.15 | 47892186 | 98219587 | tier4 | NA | 9885 | NA | 0.372 |
| LGG | TCGA-HT-7611-01A | TCGA-HT-7611 | GPM6B|CHD1 | GPM6B | CHD1 | X | 5 | -1 | -1 | 2 | 5 | 2 | 0.24 | 13789575 | 98219587 | tier3 | NA | 7345 | NA | 0.36628 |
| SKCM | TCGA-EE-A2GP-06A | TCGA-EE-A2GP | SDC3|CHD1 | SDC3 | CHD1 | 1 | 5 | -1 | -1 | 2 | 26 | 25 | 1.4 | 31342314 | 98219587 | tier4 | NA | 15464 | NA | 0 |
| SARC | TCGA-3B-A9HV-01A | TCGA-3B-A9HV | ETV1|CACNA2D1 | ETV1 | CACNA2D1 | 7 | 7 | -1 | -1 | 54 | 28 | 24 | 0.52 | 14017052 | 81695840 | tier1 | In-frame | 5858 | NA | 0.37622 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | DMTF1|SEMA3D | DMTF1 | SEMA3D | 7 | 7 | 1 | -1 | 12 | 12 | 12 | 1 | 86800405 | 84702397 | tier1 | In-frame | 4913 | NA | 0.36815 |
| PRAD | TCGA-KK-A5A1-01A | TCGA-KK-A5A1 | EPN2|SLC5A10 | EPN2 | SLC5A10 | 17 | 17 | 1 | 1 | 2 | 8 | 7 | 1.3 | 19140844 | 18916723 | tier3 | 5UTR-CDS | 5691 | NA | 0.35839 |
| BRCA | TCGA-A2-A0YM-01A | TCGA-A2-A0YM | TAF4B|CHST9 | TAF4B | CHST9 | 18 | 18 | 1 | -1 | 6 | 7 | 7 | 1.3 | 23807240 | 24628467 | tier1 | In-frame | 17345 | NA | 0 |
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