Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | BEST3|PTPRR | BEST3 | PTPRR | 12 | 12 | -1 | -1 | 2 | 3 | 2 | 0.01 | 70065208 | 71158558 | tier2 | Out-of-frame | 2073 | NA | 0.37292 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | E2F7|PTPRR | E2F7 | PTPRR | 12 | 12 | -1 | -1 | 6 | 2 | 2 | 0.059 | 77426830 | 71158558 | tier1 | Out-of-frame | 5245 | non-validated | 0.37486 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | ELK3|PTPRR | ELK3 | PTPRR | 12 | 12 | 1 | -1 | 15 | 23 | 20 | 1.8 | 96588483 | 71033057 | tier1 | 5UTR-CDS | 5504 | NA | 0.37842 |
| SARC | TCGA-DX-AB37-01A | TCGA-DX-AB37 | FGD6|PTPRR | FGD6 | PTPRR | 12 | 12 | -1 | -1 | 3 | 9 | 9 | 1.2 | 95483345 | 71033057 | tier1 | Out-of-frame | 6441 | NA | 0.37894 |
| SARC | TCGA-DX-AB35-01A | TCGA-DX-AB35 | FRS2|PTPRR | FRS2 | PTPRR | 12 | 12 | 1 | -1 | 26 | 14 | 9 | 0.86 | 69925836 | 71095103 | tier1 | 5UTR-CDS | 6779 | NA | 0.37998 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | METTL21B|PTPRR | METTL21B | PTPRR | 12 | 12 | 1 | -1 | 34 | 10 | 10 | 4.2 | 58166911 | 71158558 | tier1 | Out-of-frame | 10275 | NA | 0.36983 |
| SARC | TCGA-DX-A3LT-01A | TCGA-DX-A3LT | NAP1L1|PTPRR | NAP1L1 | PTPRR | 12 | 12 | -1 | -1 | 66 | 34 | 34 | 0.054 | 76478347 | 71158558 | tier1 | 5UTR-CDS | 11080 | validated | 0.37369 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | NT5DC3|PTPRR | NT5DC3 | PTPRR | 12 | 12 | -1 | -1 | 4 | 4 | 3 | 0.26 | 104208715 | 71158558 | tier1 | In-frame | 11822 | validated | 0.37113 |
| SARC | TCGA-DX-A23Z-01A | TCGA-DX-A23Z | SRGAP1|PTPRR | SRGAP1 | PTPRR | 12 | 12 | 1 | -1 | 6 | 7 | 5 | 1.1 | 64238663 | 71158558 | tier1 | Out-of-frame | 16843 | NA | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | TMTC2|PTPRR | TMTC2 | PTPRR | 12 | 12 | 1 | -1 | 6 | 2 | 1 | 0.22 | 83081448 | 71286757 | tier2 | Out-of-frame | 18304 | NA | 0 |
| SARC | TCGA-DX-A23Z-01A | TCGA-DX-A23Z | TRIM27|PTPRR | TRIM27 | PTPRR | 6 | 12 | -1 | -1 | 75 | 102 | 93 | 0.37 | 28879473 | 71050597 | tier1 | In-frame | 18625 | NA | 0 |
| SKCM | TCGA-ER-A2NE-06A | TCGA-ER-A2NE | ERICH1|PTPRR | ERICH1 | PTPRR | 8 | 12 | -1 | -1 | 6 | 2 | 2 | 0.033 | 642478 | 71286757 | tier1 | In-frame | 5781 | NA | 0.3723 |
| LUAD | TCGA-78-7536-01A | TCGA-78-7536 | TANC1|NR4A2 | TANC1 | NR4A2 | 2 | 2 | 1 | -1 | 2 | 5 | 2 | 0.076 | 159857701 | 157187303 | tier2 | 5UTR-5UTR | 17363 | NA | 0 |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | PLD5|PLA2R1 | PLD5 | PLA2R1 | 1 | 2 | -1 | -1 | 14 | 12 | 12 | 0.24 | 242687390 | 160808089 | tier1 | Out-of-frame | 12984 | NA | 0.3521 |
| BLCA | TCGA-FD-A6TA-01A | TCGA-FD-A6TA | COBLL1|SCN3A | COBLL1 | SCN3A | 2 | 2 | -1 | -1 | 16 | 19 | 17 | 0.88 | 165697666 | 166027058 | tier1 | Out-of-frame | 3962 | NA | 0.35714 |
| LUSC | TCGA-22-5485-01A | TCGA-22-5485 | COBLL1|SCN3A | COBLL1 | SCN3A | 2 | 2 | -1 | -1 | 9 | 4 | 4 | 0.88 | 165600197 | 166043257 | tier1 | CDS-5UTR | 3961 | non-validated | 0.35714 |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | ZBTB20|CD96 | ZBTB20 | CD96 | 3 | 3 | -1 | 1 | 15 | 29 | 20 | 0.004 | 114790066 | 111366390 | tier1 | 5UTR-CDS | 20080 | NA | 0 |
| HNSC | TCGA-BA-5555-01A | TCGA-BA-5555 | PHLDB2|CD96 | PHLDB2 | CD96 | 3 | 3 | 1 | 1 | 8 | 10 | 10 | 0.27 | 111564782 | 111366390 | tier1 | In-frame | 12755 | NA | 0.35985 |
| LUSC | TCGA-51-6867-01A | TCGA-51-6867 | PHLDB2|CD96 | PHLDB2 | CD96 | 3 | 3 | 1 | 1 | 3 | 3 | 3 | 0.27 | 111564782 | 111342601 | tier1 | In-frame | 12754 | NA | 0.35985 |
| SARC | TCGA-DX-A8BR-01A | TCGA-DX-A8BR | EEFSEC|CD96 | EEFSEC | CD96 | 3 | 3 | 1 | 1 | 2 | 2 | 2 | 1.2 | 127983624 | 111286370 | tier2 | Out-of-frame | 5328 | NA | 0.34919 |
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