TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUSC	TCGA-77-A5G7-01B	TCGA-77-A5G7	TBCE\|GGPS1	TBCE	GGPS1	1	1	1	1	2	3	3	0.71	235543464	235505023	tier3	In-frame	17525	NA	0
CESC	TCGA-JW-A5VJ-01A	TCGA-JW-A5VJ	PDHX\|STK32B	PDHX	STK32B	11	4	1	1	15	8	8	1.1	34953031	5418572	tier1	In-frame	12539	NA	0.36337
BRCA	TCGA-C8-A12L-01A	TCGA-C8-A12L	KIAA1109\|GPR125	KIAA1109	GPR125	4	4	1	-1	27	15	13	0.061	123260563	22394313	tier1	Out-of-frame	8825	validated	0.36393
OV	TCGA-13-1495-01A	TCGA-13-1495	HPS3\|CPB1	HPS3	CPB1	3	3	1	1	37	39	36	0.084	148847727	148575244	tier1	Out-of-frame	7953	NA	0.34015
GBM	TCGA-41-5651-01A	TCGA-41-5651	CLEC16A\|TXNDC11	CLEC16A	TXNDC11	16	16	1	-1	2	13	11	0.063	11076848	11778101	tier4	Out-of-frame	3781	validated	0.35068
ACC	TCGA-OR-A5K5-01A	TCGA-OR-A5K5	TMEM87B\|MERTK	TMEM87B	MERTK	2	2	1	1	19	6	6	0.21	112817614	112785928	tier1	Out-of-frame	18061	NA	0
BLCA	TCGA-XF-A9SU-01A	TCGA-XF-A9SU	TMEM87B\|MERTK	TMEM87B	MERTK	2	2	1	1	11	13	13	0.21	112834859	112765960	tier1	In-frame	18062	NA	0
BRCA	TCGA-AN-A0FT-01A	TCGA-AN-A0FT	SOX13\|MERTK	SOX13	MERTK	1	2	1	1	2	3	3	1.8	204083733	112725714	tier3	In-frame	16616	NA	0
BRCA	TCGA-A2-A0D0-01A	TCGA-A2-A0D0	TMEM87B\|MERTK	TMEM87B	MERTK	2	2	1	1	13	14	12	0.21	112813333	112751828	tier1	In-frame	18058	validated	0
BRCA	TCGA-AO-A0J2-01A	TCGA-AO-A0J2	TMEM87B\|MERTK	TMEM87B	MERTK	2	2	1	1	6	4	4	0.21	112813333	112785928	tier1	Out-of-frame	18059	validated	0
CESC	TCGA-C5-A7X5-01A	TCGA-C5-A7X5	TMEM87B\|MERTK	TMEM87B	MERTK	2	2	1	1	126	99	95	0.21	112813333	112751828	tier1	In-frame	18060	NA	0
LUAD	TCGA-50-5072-01A	TCGA-50-5072	TMEM87B\|MERTK	TMEM87B	MERTK	2	2	1	1	4	2	2	0.21	112813333	112751828	tier1	In-frame	18056	NA	0
LUSC	TCGA-85-A511-01A	TCGA-85-A511	TMEM87B\|MERTK	TMEM87B	MERTK	2	2	1	1	18	8	8	0.21	112813333	112751828	tier1	In-frame	18057	NA	0
SKCM	TCGA-ER-A3EV-06A	TCGA-ER-A3EV	METTL5\|MERTK	METTL5	MERTK	2	2	-1	1	3	6	4	0.67	170676071	112785928	tier1	Out-of-frame	10279	NA	0.38033
BRCA	TCGA-GM-A2DI-01A	TCGA-GM-A2DI	OSBPL8\|PTPRR	OSBPL8	PTPRR	12	12	-1	-1	4	2	1	0.26	76953177	71158558	tier4	5UTR-CDS	12090	NA	0.37469
BRCA	TCGA-B6-A408-01A	TCGA-B6-A408	PAWR\|PTPRR	PAWR	PTPRR	12	12	-1	-1	13	15	15	0.027	80083509	71092129	tier1	In-frame	12321	NA	0.377
COAD	TCGA-CM-6675-01A	TCGA-CM-6675	MED13L\|PTPRR	MED13L	PTPRR	12	12	-1	-1	28	11	10	1.2	116534474	71158558	tier1	Out-of-frame	10185	NA	0.37726
ESCA	TCGA-L5-A8NF-01A	TCGA-L5-A8NF	TBC1D15\|PTPRR	TBC1D15	PTPRR	12	12	1	-1	3	25	22	2.5	72266783	71286757	tier1	Out-of-frame	17455	NA	0
LUSC	TCGA-85-6175-01A	TCGA-85-6175	LOH12CR1\|PTPRR	LOH12CR1	PTPRR	12	12	1	-1	47	13	13	0.002	12514283	71095103	tier1	Out-of-frame	9421	NA	0.37773
PRAD	TCGA-EJ-5510-01A	TCGA-EJ-5510	BTAF1\|PTPRR	BTAF1	PTPRR	10	12	1	-1	5	5	5	0.021	93726514	71095103	tier1	Out-of-frame	2254	NA	0.37833

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