Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| ESCA | TCGA-LN-A5U7-01A | TCGA-LN-A5U7 | RG9MTD1|CAMK4 | RG9MTD1 | CAMK4 | 3 | 5 | 1 | 1 | 4 | 5 | 5 | 0.23 | 101280847 | 110679722 | tier1 | 5UTR-CDS | 14622 | NA | 0 |
| KIRC | TCGA-B2-4102-01A | TCGA-B2-4102 | FHIT|CAMK4 | FHIT | CAMK4 | 3 | 5 | -1 | 1 | 8 | 12 | 11 | 0.058 | 61027719 | 110679722 | tier1 | 5UTR-CDS | 6521 | validated | 0.37723 |
| STAD | TCGA-VQ-AA68-01A | TCGA-VQ-AA68 | FAM190A|SPARCL1 | FAM190A | SPARCL1 | 4 | 4 | 1 | -1 | 2 | 10 | 10 | 0.004 | 91389505 | 88394955 | tier2 | Out-of-frame | 6132 | NA | 0.33716 |
| BRCA | TCGA-A2-A0CL-01A | TCGA-A2-A0CL | GK5|MBNL1 | GK5 | MBNL1 | 3 | 3 | -1 | 1 | 7 | 6 | 6 | 0.22 | 141932368 | 152132730 | tier1 | Out-of-frame | 7080 | NA | 0.34446 |
| UCEC | TCGA-AX-A3GI-01A | TCGA-AX-A3GI | BIRC6|SLC30A6 | BIRC6 | SLC30A6 | 2 | 2 | 1 | 1 | 13 | 7 | 5 | 0.82 | 32582554 | 32396356 | tier1 | Out-of-frame | 2111 | NA | 0.36799 |
| UCS | TCGA-N6-A4V9-01A | TCGA-N6-A4V9 | BIRC6|SLC30A6 | BIRC6 | SLC30A6 | 2 | 2 | 1 | 1 | 30 | 9 | 6 | 0.82 | 32774548 | 32409342 | tier1 | Out-of-frame | 2112 | NA | 0.36799 |
| UCEC | TCGA-AX-A3G3-01A | TCGA-AX-A3G3 | NBAS|RASGRP3 | NBAS | RASGRP3 | 2 | 2 | -1 | 1 | 8 | 3 | 2 | 0.1 | 15415608 | 33787796 | tier1 | In-frame | 11116 | NA | 0.37586 |
| HNSC | TCGA-F7-A61V-01A | TCGA-F7-A61V | ODZ2|CATSPER3 | ODZ2 | CATSPER3 | 5 | 5 | 1 | 1 | 2 | 1 | 1 | 0.45 | 167303200 | 134331963 | tier2 | Out-of-frame | 12006 | NA | 0.35393 |
| PRAD | TCGA-2A-AAYU-01A | TCGA-2A-AAYU | PGM1|SLC16A12 | PGM1 | SLC16A12 | 1 | 10 | 1 | -1 | 4 | 4 | 3 | 0.13 | 64059405 | 91222381 | tier1 | CDS-5UTR | 12665 | NA | 0.3568 |
| LUSC | TCGA-39-5030-01A | TCGA-39-5030 | TRAF3|BMP3 | TRAF3 | BMP3 | 14 | 4 | 1 | 1 | 35 | 12 | 12 | 0.52 | 103296809 | 81966892 | tier1 | 5UTR-CDS | 18544 | NA | 0 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | RFWD2|GRM1 | RFWD2 | GRM1 | 1 | 6 | -1 | 1 | 20 | 16 | 16 | 0.75 | 176153769 | 146673386 | tier1 | Out-of-frame | 14599 | NA | 0 |
| BRCA | TCGA-E2-A155-01A | TCGA-E2-A155 | AL137003.1|PTPRK | AL137003.1 | PTPRK | 6 | 6 | -1 | -1 | 56 | 22 | 15 | 2.6 | 16753464 | 128411137 | tier1 | NA | 772 | NA | 0.3691 |
| BRCA | TCGA-BH-A1F6-01A | TCGA-BH-A1F6 | PUM1|PTPRK | PUM1 | PTPRK | 1 | 6 | -1 | -1 | 35 | 14 | 13 | 0.097 | 31479841 | 128643455 | tier1 | In-frame | 13949 | NA | 0 |
| HNSC | TCGA-CV-A45Z-01A | TCGA-CV-A45Z | RNF217|PTPRK | RNF217 | PTPRK | 6 | 6 | 1 | -1 | 2 | 1 | 1 | 0.71 | 125284572 | 128718833 | tier3 | Out-of-frame | 14831 | NA | 0 |
| LUAD | TCGA-44-7671-01A | TCGA-44-7671 | KIF13A|PTPRK | KIF13A | PTPRK | 6 | 6 | -1 | -1 | 3 | 3 | 3 | 0.01 | 17825999 | 128718833 | tier1 | In-frame | 8932 | NA | 0.37706 |
| READ | TCGA-EI-7002-01A | TCGA-EI-7002 | LHFPL2|PTPRK | LHFPL2 | PTPRK | 5 | 6 | -1 | -1 | 45 | 15 | 11 | 1.1 | 77805607 | 128411137 | tier1 | In-frame | 9323 | NA | 0.37193 |
| SARC | TCGA-IF-A3RQ-01A | TCGA-IF-A3RQ | EPB41L2|PTPRK | EPB41L2 | PTPRK | 6 | 6 | -1 | -1 | 3 | 7 | 4 | 0.024 | 131276245 | 128330413 | tier1 | Out-of-frame | 5650 | NA | 0.37529 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | ZNF828|PTPRK | ZNF828 | PTPRK | 13 | 6 | 1 | -1 | 2 | 1 | 1 | 0.24 | 115086707 | 128411137 | tier2 | 5UTR-CDS | 20681 | non-validated | 0 |
| UCEC | TCGA-KJ-A3U4-01A | TCGA-KJ-A3U4 | VNN3|PTPRK | VNN3 | PTPRK | 6 | 6 | -1 | -1 | 2 | 2 | 2 | 1.3 | 133055392 | 128563747 | tier2 | Out-of-frame | 19602 | NA | 0 |
| LUSC | TCGA-37-A5EN-01A | TCGA-37-A5EN | TBCE|GGPS1 | TBCE | GGPS1 | 1 | 1 | 1 | 1 | 16 | 8 | 7 | 0.71 | 235564902 | 235505023 | tier1 | Out-of-frame | 17524 | NA | 0 |
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