Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-QK-A8Z9-01B | TCGA-QK-A8Z9 | ODZ3|NR3C2 | ODZ3 | NR3C2 | 4 | 4 | 1 | -1 | 2 | 2 | 2 | 2.3 | 183370236 | 149116013 | tier2 | NA | 12009 | NA | 0.37755 |
| SARC | TCGA-SG-A6Z4-01A | TCGA-SG-A6Z4 | CCDC36|NR3C2 | CCDC36 | NR3C2 | 3 | 4 | 1 | -1 | 2 | 3 | 3 | 0.17 | 49237006 | 149116013 | tier2 | 5UTR-CDS | 3137 | NA | 0.37736 |
| LUSC | TCGA-96-7544-01A | TCGA-96-7544 | HIBCH|MFSD6 | HIBCH | MFSD6 | 2 | 2 | -1 | 1 | 2 | 2 | 2 | 1.5 | 191109613 | 191300703 | tier2 | CDS-5UTR | 7753 | NA | 0.34439 |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | EXOC5|SLC35F4 | EXOC5 | SLC35F4 | 14 | 14 | -1 | -1 | 2 | 1 | 1 | 0.012 | 57735340 | 58060842 | tier2 | CDS-5UTR | 5907 | NA | 0.35687 |
| SARC | TCGA-IF-A3RQ-01A | TCGA-IF-A3RQ | TTC7B|SLC35F4 | TTC7B | SLC35F4 | 14 | 14 | -1 | -1 | 10 | 4 | 3 | 0.82 | 91196419 | 58048151 | tier1 | In-frame | 18893 | NA | 0 |
| KICH | TCGA-KL-8341-01A | TCGA-KL-8341 | LRP12|CCL28 | LRP12 | CCL28 | 8 | 5 | -1 | -1 | 6 | 5 | 5 | 1.6 | 105544135 | 43388578 | tier1 | In-frame | 9513 | non-validated | 0.36449 |
| BRCA | TCGA-LL-A740-01A | TCGA-LL-A740 | HIVEP1|DST | HIVEP1 | DST | 6 | 6 | 1 | -1 | 15 | 9 | 9 | 0.053 | 12136125 | 56325052 | tier1 | Out-of-frame | 7793 | NA | 0.37874 |
| SARC | TCGA-PC-A5DN-01A | TCGA-PC-A5DN | C6orf52|DST | C6orf52 | DST | 6 | 6 | -1 | -1 | 5 | 4 | 4 | 0.58 | 10694727 | 56765419 | tier1 | 5UTR-CDS | 2772 | NA | 0 |
| BRCA | TCGA-AR-A24Z-01A | TCGA-AR-A24Z | PCNXL2|PTPN14 | PCNXL2 | PTPN14 | 1 | 1 | -1 | -1 | 16 | 9 | 8 | 0.083 | 233270759 | 214638300 | tier1 | CDS-5UTR | 12434 | validated | 0.36113 |
| BRCA | TCGA-AR-A2LR-01A | TCGA-AR-A2LR | GNPDA2|GRID2 | GNPDA2 | GRID2 | 4 | 4 | -1 | 1 | 7 | 6 | 2 | 0.29 | 44728491 | 94316758 | tier1 | 5UTR-CDS | 7251 | NA | 0.3627 |
| LGG | TCGA-DU-A7TD-01A | TCGA-DU-A7TD | SMARCAD1|GRID2 | SMARCAD1 | GRID2 | 4 | 4 | 1 | 1 | 18 | 21 | 19 | 0.27 | 95174158 | 94547420 | tier1 | In-frame | 16381 | NA | 0 |
| BRCA | TCGA-A8-A086-01A | TCGA-A8-A086 | NUMA1|PTH | NUMA1 | PTH | 11 | 11 | -1 | -1 | 29 | 9 | 9 | 0.73 | 71791504 | 13514407 | tier1 | 5UTR-5UTR | 11892 | NA | 0.36136 |
| LUSC | TCGA-LA-A7SW-01A | TCGA-LA-A7SW | BTBD10|PTH | BTBD10 | PTH | 11 | 11 | -1 | -1 | 24 | 2 | 2 | 100 | 13484639 | 13514407 | tier1 | 5UTR-5UTR | 2258 | NA | 0.35616 |
| LUAD | TCGA-55-A491-01A | TCGA-55-A491 | SBF2|PDE3B | SBF2 | PDE3B | 11 | 11 | -1 | 1 | 7 | 1 | 1 | 0.37 | 10049999 | 14793483 | tier2 | Out-of-frame | 15337 | NA | 0 |
| SKCM | TCGA-WE-A8ZM-06A | TCGA-WE-A8ZM | ZNF212|PDE3B | ZNF212 | PDE3B | 7 | 11 | 1 | 1 | 33 | 22 | 21 | 0.14 | 148947898 | 14839729 | tier1 | In-frame | 20398 | NA | 0 |
| BLCA | TCGA-2F-A9KO-01A | TCGA-2F-A9KO | FAM179B|KCNK13 | FAM179B | KCNK13 | 14 | 14 | 1 | 1 | 4 | 9 | 9 | 0.57 | 45523752 | 90650455 | tier1 | Out-of-frame | 6110 | NA | 0.34329 |
| BLCA | TCGA-2F-A9KO-01A | TCGA-2F-A9KO | SHPK|GUCY1A2 | SHPK | GUCY1A2 | 17 | 11 | -1 | -1 | 6 | 1 | 1 | 0.005 | 3533499 | 106856857 | tier2 | Out-of-frame | 15891 | NA | 0 |
| BRCA | TCGA-XX-A899-01A | TCGA-XX-A899 | XRRA1|GUCY1A2 | XRRA1 | GUCY1A2 | 11 | 11 | -1 | -1 | 13 | 10 | 10 | 0.34 | 74656063 | 106647308 | tier1 | 5UTR-CDS | 19996 | NA | 0 |
| HNSC | TCGA-CN-5367-01A | TCGA-CN-5367 | FCHSD2|GUCY1A2 | FCHSD2 | GUCY1A2 | 11 | 11 | -1 | -1 | 55 | 11 | 8 | 3.3 | 72851076 | 106856857 | tier1 | Out-of-frame | 6400 | NA | 0.37006 |
| SARC | TCGA-IF-A4AK-01A | TCGA-IF-A4AK | DOCK7|NMT2 | DOCK7 | NMT2 | 1 | 10 | -1 | -1 | 5 | 4 | 4 | 0.73 | 63153898 | 15183556 | tier1 | In-frame | 5045 | NA | 0.34872 |
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