Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| TGCT | TCGA-2G-AAF6-01A | TCGA-2G-AAF6 | GIT2|SLC2A13 | GIT2 | SLC2A13 | 12 | 12 | -1 | -1 | 3 | 4 | 4 | 1.4 | 110426768 | 40345167 | tier1 | Out-of-frame | 7075 | NA | 0.37717 |
| PAAD | TCGA-IB-AAUU-01A | TCGA-IB-AAUU | SNCAIP|CSNK1G3 | SNCAIP | CSNK1G3 | 5 | 5 | 1 | 1 | 4 | 3 | 3 | 0.79 | 121739560 | 122881111 | tier1 | CDS-5UTR | 16487 | NA | 0 |
| PRAD | TCGA-G9-6348-01A | TCGA-G9-6348 | GABPB1|CSNK1G3 | GABPB1 | CSNK1G3 | 15 | 5 | -1 | 1 | 4 | 1 | 1 | 0.48 | 50647182 | 122881111 | tier3 | 5UTR-5UTR | 6895 | NA | 0.37775 |
| BRCA | TCGA-BH-A0B3-01A | TCGA-BH-A0B3 | HSF1|ADAMTS12 | HSF1 | ADAMTS12 | 8 | 5 | 1 | -1 | 27 | 24 | 22 | 2.3 | 145515556 | 33596165 | tier1 | Out-of-frame | 7982 | validated | 0.37426 |
| BRCA | TCGA-A2-A0SY-01A | TCGA-A2-A0SY | WDR70|ADAMTS12 | WDR70 | ADAMTS12 | 5 | 5 | 1 | -1 | 16 | 8 | 8 | 0.93 | 37605340 | 33751653 | tier1 | In-frame | 19800 | NA | 0 |
| LUAD | TCGA-93-8067-01A | TCGA-93-8067 | TMEM182|ADAMTS12 | TMEM182 | ADAMTS12 | 2 | 5 | 1 | -1 | 2 | 1 | 1 | 0.32 | 103414459 | 33751653 | tier2 | Out-of-frame | 17995 | NA | 0 |
| LUAD | TCGA-50-5944-01A | TCGA-50-5944 | UQCC|ADAMTS12 | UQCC | ADAMTS12 | 20 | 5 | -1 | -1 | 2 | 1 | 1 | 0.33 | 33934967 | 33624456 | tier3 | In-frame | 19278 | NA | 0 |
| LUSC | TCGA-94-8491-01A | TCGA-94-8491 | RAB3GAP2|NEK7 | RAB3GAP2 | NEK7 | 1 | 1 | -1 | 1 | 3 | 1 | 1 | 0.088 | 220406141 | 198201683 | tier3 | CDS-5UTR | 14090 | NA | 0 |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | DENND1B|ATP6V1G3 | DENND1B | ATP6V1G3 | 1 | 1 | -1 | -1 | 4 | 16 | 16 | 0.58 | 197684161 | 198498311 | tier1 | Out-of-frame | 4702 | NA | 0.34812 |
| SARC | TCGA-K1-A6RU-01A | TCGA-K1-A6RU | C21orf70|FER | C21orf70 | FER | 21 | 5 | 1 | 1 | 3 | 3 | 3 | 0.032 | 46380083 | 108436097 | tier1 | In-frame | 2663 | NA | 0 |
| BRCA | TCGA-AN-A0AR-01A | TCGA-AN-A0AR | USP6NL|CCDC3 | USP6NL | CCDC3 | 10 | 10 | -1 | -1 | 14 | 12 | 12 | 0.54 | 11531101 | 13116100 | tier1 | CDS-5UTR | 19424 | NA | 0 |
| LUAD | TCGA-49-AAR0-01A | TCGA-49-AAR0 | PRPF18|CCDC3 | PRPF18 | CCDC3 | 10 | 10 | 1 | -1 | 2 | 2 | 2 | 0.68 | 13629152 | 12940679 | tier3 | In-frame | 13592 | NA | 0.33602 |
| PRAD | TCGA-V1-A9O5-06A | TCGA-V1-A9O5 | ZNF585A|CCDC3 | ZNF585A | CCDC3 | 19 | 10 | -1 | -1 | 24 | 36 | 34 | 1.6 | 37646767 | 13040512 | tier1 | CDS-5UTR | 20564 | NA | 0 |
| PRAD | TCGA-J9-A8CL-01A | TCGA-J9-A8CL | C4orf29|SLC25A31 | C4orf29 | SLC25A31 | 4 | 4 | 1 | 1 | 11 | 18 | 17 | 0.1 | 128910976 | 128694541 | tier1 | Out-of-frame | 2725 | NA | 0 |
| STAD | TCGA-BR-8590-01A | TCGA-BR-8590 | LARP1B|SLC25A31 | LARP1B | SLC25A31 | 4 | 4 | 1 | 1 | 2 | 3 | 3 | 0.32 | 129028468 | 128665827 | tier4 | In-frame | 9233 | NA | 0.32803 |
| BRCA | TCGA-EW-A6SB-01A | TCGA-EW-A6SB | UIMC1|PTPRO | UIMC1 | PTPRO | 5 | 12 | -1 | 1 | 7 | 4 | 4 | 0.04 | 176433540 | 15710389 | tier1 | 5UTR-CDS | 19222 | NA | 0 |
| PAAD | TCGA-F2-6879-01A | TCGA-F2-6879 | LRP6|PTPRO | LRP6 | PTPRO | 12 | 12 | -1 | 1 | 45 | 24 | 21 | 0.54 | 12332744 | 15733631 | tier1 | In-frame | 9549 | NA | 0.37122 |
| PRAD | TCGA-HC-7081-01A | TCGA-HC-7081 | ZNF292|PTPRO | ZNF292 | PTPRO | 6 | 12 | 1 | 1 | 6 | 5 | 4 | 0.58 | 87865477 | 15652376 | tier1 | Out-of-frame | 20447 | NA | 0 |
| LUAD | TCGA-35-5375-01A | TCGA-35-5375 | LRBA|DRD3 | LRBA | DRD3 | 4 | 3 | -1 | -1 | 3 | 2 | 2 | 0.6 | 151749332 | 113847759 | tier1 | Out-of-frame | 9475 | NA | 0.37474 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | ARHGAP10|EDNRA | ARHGAP10 | EDNRA | 4 | 4 | 1 | 1 | 4 | 5 | 5 | 0.14 | 148887990 | 148441003 | tier1 | In-frame | 1206 | non-validated | 0.37972 |
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