Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-AP-A5FX-01A | TCGA-AP-A5FX | EDEM1|ITPR1 | EDEM1 | ITPR1 | 3 | 3 | 1 | 1 | 7 | 9 | 8 | 0.18 | 5236966 | 4887823 | tier1 | In-frame | 5271 | NA | 0.37189 |
| LUAD | TCGA-55-1596-01A | TCGA-55-1596 | C10orf112|GPR158 | C10orf112 | GPR158 | 10 | 10 | 1 | 1 | 2 | 2 | 2 | 1.2 | 19572110 | 25755580 | tier2 | Out-of-frame | 2305 | non-validated | 0 |
| HNSC | TCGA-CV-7406-01A | TCGA-CV-7406 | FBXO28|LYZL2 | FBXO28 | LYZL2 | 1 | 10 | 1 | -1 | 27 | 19 | 19 | 0.044 | 224302098 | 30901829 | tier1 | Out-of-frame | 6345 | NA | 0.36055 |
| BLCA | TCGA-G2-A3VY-01A | TCGA-G2-A3VY | WDR70|CACNA2D4 | WDR70 | CACNA2D4 | 5 | 12 | 1 | -1 | 10 | 7 | 6 | 0.18 | 37516692 | 2019131 | tier1 | Out-of-frame | 19803 | NA | 0 |
| BRCA | TCGA-AO-A03L-01A | TCGA-AO-A03L | UQCC|CACNA2D4 | UQCC | CACNA2D4 | 20 | 12 | -1 | -1 | 8 | 4 | 4 | 0.77 | 33954360 | 1919753 | tier1 | Out-of-frame | 19279 | validated | 0 |
| BRCA | TCGA-AC-A2FM-01A | TCGA-AC-A2FM | ZNF274|CACNA2D4 | ZNF274 | CACNA2D4 | 19 | 12 | 1 | -1 | 46 | 25 | 23 | 0.17 | 58721439 | 1996235 | tier1 | Out-of-frame | 20430 | NA | 0 |
| LUAD | TCGA-78-7161-01A | TCGA-78-7161 | FANCA|CACNA2D4 | FANCA | CACNA2D4 | 16 | 12 | -1 | -1 | 3 | 3 | 3 | 1.2 | 89818546 | 1955855 | tier1 | 5UTR-CDS | 6226 | NA | 0.3639 |
| BLCA | TCGA-XF-AAMX-01A | TCGA-XF-AAMX | PPFIBP1|CACNA1C | PPFIBP1 | CACNA1C | 12 | 12 | 1 | 1 | 7 | 2 | 2 | 0.8 | 27677298 | 2690756 | tier1 | 5UTR-CDS | 13283 | NA | 0.37096 |
| BRCA | TCGA-C8-A1HJ-01A | TCGA-C8-A1HJ | SYNE1|CACNA1C | SYNE1 | CACNA1C | 6 | 12 | -1 | 1 | 2 | 5 | 5 | 0.3 | 152614723 | 2778099 | tier2 | In-frame | 17239 | NA | 0 |
| BRCA | TCGA-D8-A27V-01A | TCGA-D8-A27V | TBL1XR1|CACNA1C | TBL1XR1 | CACNA1C | 3 | 12 | -1 | 1 | 36 | 35 | 30 | 0.025 | 176816254 | 2721069 | tier1 | 5UTR-CDS | 17545 | NA | 0 |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | TSPAN9|CACNA1C | TSPAN9 | CACNA1C | 12 | 12 | 1 | 1 | 8 | 7 | 6 | 0.57 | 3310422 | 2773991 | tier1 | Out-of-frame | 18809 | NA | 0 |
| LAML | TCGA-AB-2943-03A | TCGA-AB-2943 | MYH9|CACNA1C | MYH9 | CACNA1C | 22 | 12 | -1 | 1 | 2 | 7 | 6 | 0.081 | 36783852 | 2224390 | tier3 | 5UTR-CDS | 10896 | NA | 0.38128 |
| STAD | TCGA-RD-A8N6-01A | TCGA-RD-A8N6 | FGD4|CACNA1C | FGD4 | CACNA1C | 12 | 12 | 1 | 1 | 4 | 6 | 6 | 1.1 | 32552893 | 2558142 | tier4 | Out-of-frame | 6431 | NA | 0.37551 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | C19orf25|CACNA1C | C19orf25 | CACNA1C | 19 | 12 | -1 | 1 | 2 | 2 | 2 | 0.085 | 1478773 | 2705040 | tier2 | Out-of-frame | 2571 | NA | 0 |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | AFTPH|THRB | AFTPH | THRB | 2 | 3 | 1 | -1 | 3 | 3 | 3 | 1.1 | 64812679 | 24193981 | tier1 | Out-of-frame | 604 | validated | 0.3696 |
| PRAD | TCGA-KK-A7B1-01A | TCGA-KK-A7B1 | PDZRN3|THRB | PDZRN3 | THRB | 3 | 3 | -1 | -1 | 4 | 5 | 5 | 0.093 | 73651505 | 24378862 | tier1 | CDS-5UTR | 12591 | NA | 0.38013 |
| BRCA | TCGA-E9-A22G-01A | TCGA-E9-A22G | GRB10|SLC2A13 | GRB10 | SLC2A13 | 7 | 12 | -1 | -1 | 6 | 7 | 6 | 0.39 | 50771518 | 40154054 | tier1 | In-frame | 7407 | NA | 0.37769 |
| LUAD | TCGA-55-A493-01A | TCGA-55-A493 | KIF21A|SLC2A13 | KIF21A | SLC2A13 | 12 | 12 | -1 | -1 | 2 | 2 | 2 | 0.14 | 39836729 | 40265763 | tier4 | In-frame | 8975 | NA | 0.348 |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | ADIPOR2|SLC2A13 | ADIPOR2 | SLC2A13 | 12 | 12 | 1 | -1 | 48 | 22 | 20 | 0.29 | 1863680 | 40442012 | tier1 | Out-of-frame | 511 | validated | 0.34383 |
| SKCM | TCGA-ER-A2NE-06A | TCGA-ER-A2NE | TSPAN9|SLC2A13 | TSPAN9 | SLC2A13 | 12 | 12 | 1 | -1 | 3 | 2 | 2 | 3.8 | 3192885 | 40345167 | tier1 | 5UTR-CDS | 18816 | NA | 0 |
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