Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | TFDP1|TMCO3 | TFDP1 | TMCO3 | 13 | 13 | 1 | 1 | 41 | 101 | 98 | 0.89 | 114277601 | 114164553 | tier1 | In-frame | 17701 | non-validated | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | GNA11|TMCO3 | GNA11 | TMCO3 | 19 | 13 | 1 | 1 | 27 | 23 | 22 | 0.6 | 3094785 | 114174931 | tier1 | In-frame | 7157 | NA | 0.37473 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | MYO1E|TMCO3 | MYO1E | TMCO3 | 15 | 13 | -1 | 1 | 17 | 10 | 10 | 6.2 | 59664697 | 114174931 | tier1 | Out-of-frame | 10984 | NA | 0.35542 |
| READ | TCGA-DC-6154-01A | TCGA-DC-6154 | PAN3|LATS2 | PAN3 | LATS2 | 13 | 13 | 1 | -1 | 15 | 20 | 18 | 0.08 | 28713224 | 21557945 | tier1 | 5UTR-CDS | 12233 | NA | 0.36895 |
| BLCA | TCGA-XF-A9SK-01A | TCGA-XF-A9SK | ROBO1|LPHN3 | ROBO1 | LPHN3 | 3 | 4 | -1 | 1 | 3 | 2 | 2 | 0.15 | 78734896 | 62679527 | tier1 | In-frame | 14867 | NA | 0 |
| BRCA | TCGA-BH-A0HY-01A | TCGA-BH-A0HY | EFHC1|LPHN3 | EFHC1 | LPHN3 | 6 | 4 | 1 | 1 | 3 | 6 | 6 | 0.38 | 52288965 | 62362839 | tier1 | CDS-5UTR | 5346 | NA | 0.35764 |
| GBM | TCGA-19-0957-02A | TCGA-19-0957 | CHIC2|LPHN3 | CHIC2 | LPHN3 | 4 | 4 | -1 | 1 | 10 | 55 | 49 | 0.023 | 54880004 | 62248842 | tier1 | CDS-5UTR | 3678 | NA | 0.36228 |
| HNSC | TCGA-CQ-A4CI-01A | TCGA-CQ-A4CI | SH2D3A|GPM6A | SH2D3A | GPM6A | 19 | 4 | -1 | -1 | 21 | 17 | 16 | 0.23 | 6767398 | 176573138 | tier1 | 5UTR-CDS | 15800 | NA | 0 |
| CHOL | TCGA-W5-AA2Z-01A | TCGA-W5-AA2Z | VPS13D|VEGFC | VPS13D | VEGFC | 1 | 4 | 1 | -1 | 8 | 13 | 11 | 1.2 | 12353761 | 177650900 | tier1 | In-frame | 19635 | NA | 0 |
| LUSC | TCGA-21-1083-01A | TCGA-21-1083 | SMAD2|CD226 | SMAD2 | CD226 | 18 | 18 | -1 | -1 | 15 | 14 | 13 | 0.047 | 45456732 | 67563281 | tier1 | 5UTR-CDS | 16334 | non-validated | 0 |
| PRAD | TCGA-ZG-A9M4-01A | TCGA-ZG-A9M4 | C18orf1|CD226 | C18orf1 | CD226 | 18 | 18 | 1 | -1 | 7 | 4 | 4 | 0.12 | 13438383 | 67540482 | tier1 | In-frame | 2536 | NA | 0 |
| BRCA | TCGA-A8-A07C-01A | TCGA-A8-A07C | XRN1|PIP4K2A | XRN1 | PIP4K2A | 3 | 10 | -1 | -1 | 20 | 4 | 3 | 0.39 | 142166712 | 22898646 | tier1 | In-frame | 19988 | NA | 0 |
| LGG | TCGA-FG-8185-01A | TCGA-FG-8185 | RIMKLB|PIP4K2A | RIMKLB | PIP4K2A | 12 | 10 | 1 | -1 | 16 | 29 | 26 | 0.065 | 8850893 | 22898646 | tier1 | 5UTR-CDS | 14691 | NA | 0 |
| LUSC | TCGA-NC-A5HM-01A | TCGA-NC-A5HM | COX7B2|PIP4K2A | COX7B2 | PIP4K2A | 4 | 10 | -1 | -1 | 3 | 2 | 2 | 0.082 | 46911177 | 22898646 | tier1 | 5UTR-CDS | 4093 | NA | 0.35483 |
| BLCA | TCGA-K4-A83P-01A | TCGA-K4-A83P | ARL8B|ITPR1 | ARL8B | ITPR1 | 3 | 3 | 1 | 1 | 15 | 14 | 12 | 0.31 | 5164273 | 4808214 | tier1 | In-frame | 1407 | NA | 0.37826 |
| BRCA | TCGA-BH-A0C0-01A | TCGA-BH-A0C0 | SF1|ITPR1 | SF1 | ITPR1 | 11 | 3 | -1 | 1 | 6 | 8 | 8 | 0.36 | 64543970 | 4669447 | tier1 | In-frame | 15722 | NA | 0 |
| CESC | TCGA-EA-A50E-01A | TCGA-EA-A50E | ARL8B|ITPR1 | ARL8B | ITPR1 | 3 | 3 | 1 | 1 | 45 | 38 | 33 | 0.31 | 5164273 | 4887823 | tier1 | In-frame | 1405 | NA | 0.37826 |
| CESC | TCGA-JW-A5VJ-01A | TCGA-JW-A5VJ | ARL8B|ITPR1 | ARL8B | ITPR1 | 3 | 3 | 1 | 1 | 7 | 1 | 1 | 0.31 | 5164273 | 4808214 | tier3 | In-frame | 1406 | NA | 0.37826 |
| CESC | TCGA-VS-A9UO-01A | TCGA-VS-A9UO | SRGAP3|ITPR1 | SRGAP3 | ITPR1 | 3 | 3 | -1 | 1 | 5 | 5 | 4 | 0.021 | 9032196 | 4808214 | tier1 | In-frame | 16850 | NA | 0 |
| SKCM | TCGA-EB-A4XL-01A | TCGA-EB-A4XL | EPB41|ITPR1 | EPB41 | ITPR1 | 1 | 3 | 1 | 1 | 8 | 7 | 5 | 0.18 | 29435949 | 4774772 | tier1 | In-frame | 5630 | NA | 0.38156 |
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