Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 446 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-FR-A3YO-06A | TCGA-FR-A3YO | UBASH3B|GRIK4 | UBASH3B | GRIK4 | 11 | 11 | 1 | 1 | 29 | 15 | 15 | 1.3 | 122526918 | 120823564 | tier1 | Out-of-frame | 19051 | NA | 0 |
| BRCA | TCGA-B6-A0IM-01A | TCGA-B6-A0IM | RNF216|ST14 | RNF216 | ST14 | 7 | 11 | -1 | 1 | 58 | 37 | 28 | 0.71 | 5751392 | 130058009 | tier1 | In-frame | 14828 | NA | 0 |
| PRAD | TCGA-EJ-8469-01A | TCGA-EJ-8469 | TBL1XR1|ADAM33 | TBL1XR1 | ADAM33 | 3 | 20 | -1 | -1 | 37 | 25 | 16 | 3.6 | 176914909 | 3657790 | tier1 | 5UTR-CDS | 17543 | NA | 0 |
| BLCA | TCGA-KQ-A41O-01A | TCGA-KQ-A41O | ARAP1|SLC22A8 | ARAP1 | SLC22A8 | 11 | 11 | -1 | -1 | 7 | 9 | 4 | 1.6 | 72404370 | 62782455 | tier1 | CDS-5UTR | 1176 | NA | 0.37968 |
| LIHC | TCGA-DD-AADY-01A | TCGA-DD-AADY | RNF121|SLC22A8 | RNF121 | SLC22A8 | 11 | 11 | 1 | -1 | 10 | 6 | 6 | 0.2 | 71671937 | 62763624 | tier1 | Out-of-frame | 14747 | NA | 0 |
| LIHC | TCGA-BW-A5NO-01A | TCGA-BW-A5NO | TMEM223|SLC22A8 | TMEM223 | SLC22A8 | 11 | 11 | -1 | -1 | 3 | 2 | 2 | 0.028 | 62559151 | 62761350 | tier1 | In-frame | 18012 | non-validated | 0 |
| SARC | TCGA-DX-A7EU-01A | TCGA-DX-A7EU | DVL1|PLCH2 | DVL1 | PLCH2 | 1 | 1 | -1 | 1 | 6 | 3 | 2 | 0.21 | 1273357 | 2433551 | tier1 | Out-of-frame | 5188 | NA | 0.37139 |
| BRCA | TCGA-OL-A66P-01A | TCGA-OL-A66P | TMEM135|CHEK1 | TMEM135 | CHEK1 | 11 | 11 | 1 | 1 | 6 | 33 | 26 | 0.49 | 86802437 | 125545823 | tier1 | CDS-3UTR | 17970 | NA | 0 |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | RNF214|SIDT2 | RNF214 | SIDT2 | 11 | 11 | 1 | 1 | 19 | 8 | 8 | 0.45 | 117117664 | 117060882 | tier1 | In-frame | 14822 | NA | 0 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | CEP164|SIDT2 | CEP164 | SIDT2 | 11 | 11 | 1 | 1 | 4 | 3 | 3 | 0.25 | 117253658 | 117059424 | tier1 | Out-of-frame | 3538 | NA | 0.34412 |
| UCEC | TCGA-B5-A3S1-01A | TCGA-B5-A3S1 | RNF214|SIDT2 | RNF214 | SIDT2 | 11 | 11 | 1 | 1 | 3 | 2 | 1 | 0.45 | 117117664 | 117054790 | tier2 | Out-of-frame | 14821 | NA | 0 |
| HNSC | TCGA-CV-7421-01A | TCGA-CV-7421 | TPX2|DUSP15 | TPX2 | DUSP15 | 20 | 20 | 1 | -1 | 8 | 7 | 6 | 0.77 | 30347982 | 30438479 | tier1 | Out-of-frame | 18523 | NA | 0 |
| PRAD | TCGA-ZG-A8QZ-01A | TCGA-ZG-A8QZ | DYNLT1|DUSP15 | DYNLT1 | DUSP15 | 6 | 20 | -1 | -1 | 19 | 10 | 10 | 0.62 | 159062351 | 30457400 | tier1 | CDS-5UTR | 5225 | NA | 0.35757 |
| HNSC | TCGA-RS-A6TP-01A | TCGA-RS-A6TP | TRPC4AP|KIAA0889 | TRPC4AP | KIAA0889 | 20 | 20 | -1 | -1 | 11 | 9 | 7 | 0.47 | 33665849 | 35433305 | tier1 | In-frame | 18721 | NA | 0 |
| SKCM | TCGA-D3-A1Q9-06A | TCGA-D3-A1Q9 | SNX32|PLCB3 | SNX32 | PLCB3 | 11 | 11 | 1 | 1 | 5 | 7 | 1 | 0.026 | 65601572 | 64033358 | tier4 | Out-of-frame | 16563 | NA | 0 |
| BRCA | TCGA-E9-A229-01A | TCGA-E9-A229 | DLG5|PCDH15 | DLG5 | PCDH15 | 10 | 10 | -1 | -1 | 11 | 10 | 7 | 0.7 | 79685975 | 56287637 | tier1 | In-frame | 4888 | NA | 0.37485 |
| BRCA | TCGA-C8-A1HN-01A | TCGA-C8-A1HN | DOCK1|PCDH15 | DOCK1 | PCDH15 | 10 | 10 | 1 | -1 | 38 | 27 | 24 | 0.64 | 129179632 | 56287637 | tier1 | Out-of-frame | 5023 | NA | 0.37497 |
| BRCA | TCGA-A2-A0EV-01A | TCGA-A2-A0EV | ZNF83|PCDH15 | ZNF83 | PCDH15 | 19 | 10 | -1 | -1 | 22 | 14 | 14 | 0.3 | 53138319 | 56424050 | tier1 | 5UTR-5UTR | 20683 | NA | 0 |
| OV | TCGA-13-1507-01A | TCGA-13-1507 | USP54|PCDH15 | USP54 | PCDH15 | 10 | 10 | -1 | -1 | 2 | 4 | 3 | 0.59 | 75331179 | 56926411 | tier2 | CDS-5UTR | 19419 | NA | 0 |
| LUSC | TCGA-NC-A5HN-01A | TCGA-NC-A5HN | RTKN|CTF1 | RTKN | CTF1 | 2 | 16 | -1 | 1 | 15 | 4 | 3 | 0.16 | 74668833 | 30910736 | tier1 | Out-of-frame | 15165 | NA | 0 |
|
Showing page 446 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.