Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | C7orf70|SCGB1A1 | C7orf70 | SCGB1A1 | 7 | 11 | -1 | 1 | 176 | 96 | 94 | 100 | 6388204 | 62189693 | tier1 | 5UTR-CDS | 2800 | NA | 0 |
| STAD | TCGA-VQ-A8DV-01A | TCGA-VQ-A8DV | TAF6L|SCGB1A1 | TAF6L | SCGB1A1 | 11 | 11 | 1 | 1 | 28 | 269 | 229 | 100 | 62543942 | 62189693 | tier1 | Out-of-frame | 17348 | NA | 0 |
| BLCA | TCGA-GC-A6I1-01A | TCGA-GC-A6I1 | PSMD13|HSD17B12 | PSMD13 | HSD17B12 | 11 | 11 | 1 | 1 | 3 | 6 | 6 | 2.1 | 237144 | 43819870 | tier1 | Out-of-frame | 13728 | NA | 0.35743 |
| BLCA | TCGA-XF-AAN7-01A | TCGA-XF-AAN7 | LDLRAD3|PAMR1 | LDLRAD3 | PAMR1 | 11 | 11 | 1 | -1 | 4 | 5 | 5 | 1.5 | 35965694 | 35463241 | tier1 | In-frame | 9278 | NA | 0.33244 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | LARP4B|PAMR1 | LARP4B | PAMR1 | 10 | 11 | -1 | -1 | 7 | 1 | 1 | 0.18 | 909683 | 35515820 | tier2 | In-frame | 9241 | NA | 0 |
| LIHC | TCGA-ED-A82E-01A | TCGA-ED-A82E | YIPF3|SERPING1 | YIPF3 | SERPING1 | 6 | 11 | -1 | 1 | 2 | 2 | 1 | 0.12 | 43480880 | 57365161 | tier4 | NA | 20037 | NA | 0 |
| CESC | TCGA-C5-A3HD-01B | TCGA-C5-A3HD | MEN1|PTPRJ | MEN1 | PTPRJ | 11 | 11 | -1 | 1 | 51 | 17 | 17 | 0.073 | 64577137 | 48149332 | tier1 | In-frame | 10253 | NA | 0.38186 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | SOX6|PTPRJ | SOX6 | PTPRJ | 11 | 11 | -1 | 1 | 9 | 16 | 15 | 0.72 | 16362558 | 48134299 | tier1 | Out-of-frame | 16628 | NA | 0 |
| CESC | TCGA-EX-A3L1-01A | TCGA-EX-A3L1 | DYNC2H1|ENDOD1 | DYNC2H1 | ENDOD1 | 11 | 11 | 1 | 1 | 2 | 2 | 2 | 0.19 | 103229087 | 94861541 | tier2 | In-frame | 5218 | NA | 0.34532 |
| LUAD | TCGA-44-7660-01A | TCGA-44-7660 | ARRB1|KLHL35 | ARRB1 | KLHL35 | 11 | 11 | -1 | -1 | 15 | 6 | 5 | 2.8 | 75062632 | 75137683 | tier1 | Out-of-frame | 1453 | NA | 0.37996 |
| SKCM | TCGA-GN-A8LL-06A | TCGA-GN-A8LL | GDPD5|SERPINH1 | GDPD5 | SERPINH1 | 11 | 11 | -1 | 1 | 45 | 40 | 35 | 0.041 | 75188664 | 75277361 | tier1 | CDS-5UTR | 7030 | NA | 0.35979 |
| SKCM | TCGA-YG-AA3P-06A | TCGA-YG-AA3P | RBM38|CAPN5 | RBM38 | CAPN5 | 20 | 11 | 1 | 1 | 9 | 1 | 1 | 0.37 | 55968389 | 76823635 | tier2 | Out-of-frame | 14462 | NA | 0 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | ARRB1|PAK1 | ARRB1 | PAK1 | 11 | 11 | -1 | -1 | 5 | 1 | 1 | 1.5 | 75062632 | 77103586 | tier3 | CDS-5UTR | 1455 | NA | 0.38411 |
| BRCA | TCGA-E2-A109-01A | TCGA-E2-A109 | UVRAG|PAK1 | UVRAG | PAK1 | 11 | 11 | 1 | -1 | 25 | 19 | 16 | 0.045 | 75827059 | 77034405 | tier1 | Out-of-frame | 19484 | validated | 0 |
| LIHC | TCGA-2Y-A9H2-01A | TCGA-2Y-A9H2 | NADSYN1|PAK1 | NADSYN1 | PAK1 | 11 | 11 | 1 | -1 | 5 | 5 | 4 | 0.37 | 71169590 | 77103586 | tier1 | CDS-5UTR | 11071 | NA | 0.37405 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | TRIM29|PAK1 | TRIM29 | PAK1 | 11 | 11 | -1 | -1 | 80 | 65 | 63 | 1.5 | 120055918 | 77034405 | tier1 | NA | 18628 | NA | 0 |
| SKCM | TCGA-YG-AA3P-06A | TCGA-YG-AA3P | ARRB1|PAK1 | ARRB1 | PAK1 | 11 | 11 | -1 | -1 | 3 | 13 | 4 | 1.5 | 74993006 | 77103583 | tier1 | NA | 1456 | NA | 0.38411 |
| SKCM | TCGA-WE-A8ZN-06A | TCGA-WE-A8ZN | CHKA|PAK1 | CHKA | PAK1 | 11 | 11 | -1 | -1 | 10 | 4 | 2 | 0.34 | 67864486 | 77085410 | tier2 | Out-of-frame | 3686 | NA | 0.37382 |
| LUAD | TCGA-67-3774-01A | TCGA-67-3774 | C2CD3|NCAM1 | C2CD3 | NCAM1 | 11 | 11 | -1 | 1 | 3 | 1 | 1 | 0.034 | 73739332 | 113073101 | tier2 | CDS-5UTR | 2678 | NA | 0.37633 |
| LUAD | TCGA-67-3774-01A | TCGA-67-3774 | ODZ4|GRIK4 | ODZ4 | GRIK4 | 11 | 11 | -1 | 1 | 2 | 2 | 2 | 0.22 | 78775783 | 120811056 | tier3 | Out-of-frame | 12011 | NA | 0.36654 |
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