Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-LA-A7SW-01A | TCGA-LA-A7SW | URM1|C9orf3 | URM1 | C9orf3 | 9 | 9 | 1 | 1 | 15 | 15 | 15 | 1.1 | 131133694 | 97822976 | tier2 | Out-of-frame | 19294 | NA | 0 |
| PRAD | TCGA-ZG-A9L5-01A | TCGA-ZG-A9L5 | MYO1E|C9orf3 | MYO1E | C9orf3 | 15 | 9 | -1 | 1 | 47 | 32 | 25 | 1.7 | 59548483 | 97822976 | tier1 | Out-of-frame | 10982 | NA | 0 |
| SKCM | TCGA-ER-A19E-06A | TCGA-ER-A19E | CORO2A|C9orf3 | CORO2A | C9orf3 | 9 | 9 | -1 | 1 | 4 | 2 | 1 | 0.59 | 100919742 | 97767440 | tier3 | In-frame | 4080 | non-validated | 0 |
| BRCA | TCGA-D8-A1XA-01A | TCGA-D8-A1XA | SUSD1|UGCG | SUSD1 | UGCG | 9 | 9 | -1 | 1 | 65 | 26 | 21 | 1.6 | 114840818 | 114676885 | tier1 | Out-of-frame | 17200 | NA | 0 |
| LIHC | TCGA-ED-A82E-01A | TCGA-ED-A82E | FAM117B|UGCG | FAM117B | UGCG | 2 | 9 | 1 | 1 | 3 | 2 | 1 | 0.24 | 203500511 | 114676885 | tier2 | Out-of-frame | 6018 | NA | 0.34013 |
| CESC | TCGA-HM-A6W2-06A | TCGA-HM-A6W2 | ZFYVE26|NR6A1 | ZFYVE26 | NR6A1 | 14 | 9 | -1 | -1 | 2 | 1 | 1 | 0.66 | 68228083 | 127300598 | tier2 | Out-of-frame | 20298 | NA | 0 |
| HNSC | TCGA-CN-4723-01A | TCGA-CN-4723 | DNM1|LCN2 | DNM1 | LCN2 | 9 | 9 | 1 | 1 | 78 | 56 | 51 | 0.56 | 130965910 | 130913917 | tier1 | In-frame | 4962 | NA | 0.37617 |
| SARC | TCGA-K1-A6RU-01A | TCGA-K1-A6RU | RMI1|LCN2 | RMI1 | LCN2 | 9 | 9 | 1 | 1 | 32 | 26 | 3 | 1.6 | 86595806 | 130913917 | tier1 | NA | 14709 | NA | 0 |
| KIRP | TCGA-BQ-7053-01A | TCGA-BQ-7053 | HNF1B|NOTCH1 | HNF1B | NOTCH1 | 17 | 9 | -1 | -1 | 1056 | 691 | 605 | 0.99 | 36099431 | 139396940 | tier1 | In-frame | 7879 | NA | 0.38462 |
| LUSC | TCGA-NC-A5HK-01A | TCGA-NC-A5HK | SEC16A|NOTCH1 | SEC16A | NOTCH1 | 9 | 9 | -1 | -1 | 11 | 1 | 1 | 0.069 | 139353586 | 139418431 | tier2 | Out-of-frame | 15498 | NA | 0 |
| THCA | TCGA-DJ-A2Q3-01A | TCGA-DJ-A2Q3 | SEC16A|NOTCH1 | SEC16A | NOTCH1 | 9 | 9 | -1 | -1 | 4 | 7 | 4 | 0.069 | 139357339 | 139438554 | tier1 | Out-of-frame | 15497 | NA | 0 |
| BLCA | TCGA-SY-A9G0-01A | TCGA-SY-A9G0 | TRAF2|CACNA1B | TRAF2 | CACNA1B | 9 | 9 | 1 | 1 | 2 | 2 | 2 | 0.24 | 139794972 | 140967940 | tier3 | In-frame | 18542 | NA | 0 |
| BLCA | TCGA-4Z-AA84-01A | TCGA-4Z-AA84 | PFKP|CAMK2G | PFKP | CAMK2G | 10 | 10 | 1 | -1 | 4 | 6 | 6 | 4.7 | 3159038 | 75620647 | tier1 | Out-of-frame | 12647 | NA | 0.38254 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | SPG11|CAMK2G | SPG11 | CAMK2G | 15 | 10 | -1 | -1 | 19 | 6 | 5 | 3.8 | 44865745 | 75613004 | tier1 | In-frame | 16721 | NA | 0 |
| SARC | TCGA-X6-A7WB-01A | TCGA-X6-A7WB | KLF12|CAMK2G | KLF12 | CAMK2G | 13 | 10 | -1 | -1 | 18 | 20 | 18 | 0.12 | 74518118 | 75577312 | tier1 | Out-of-frame | 9039 | NA | 0.38943 |
| UCS | TCGA-NG-A4VU-01A | TCGA-NG-A4VU | NOLC1|HTR7 | NOLC1 | HTR7 | 10 | 10 | 1 | -1 | 19 | 1 | 1 | 0.44 | 103912287 | 92509351 | tier2 | Out-of-frame | 11640 | NA | 0.37513 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | SAR1A|NPFFR1 | SAR1A | NPFFR1 | 10 | 10 | -1 | -1 | 18 | 14 | 13 | 0.52 | 71930169 | 72026147 | tier1 | 5UTR-CDS | 15309 | validated | 0 |
| BRCA | TCGA-A2-A0ST-01A | TCGA-A2-A0ST | ZNF346|PAOX | ZNF346 | PAOX | 5 | 10 | 1 | 1 | 2 | 4 | 4 | 0.64 | 176449914 | 135202460 | tier4 | Out-of-frame | 20472 | NA | 0 |
| BRCA | TCGA-A8-A08L-01A | TCGA-A8-A08L | CTBP2|ADAM12 | CTBP2 | ADAM12 | 10 | 10 | -1 | -1 | 11 | 29 | 27 | 0.085 | 126799559 | 128019078 | tier1 | 5UTR-CDS | 4307 | non-validated | 0.38341 |
| BRCA | TCGA-B6-A0RG-01A | TCGA-B6-A0RG | RASGRP1|LRRC4C | RASGRP1 | LRRC4C | 15 | 11 | -1 | -1 | 8 | 13 | 13 | 0.73 | 38852022 | 40162403 | tier2 | CDS-5UTR | 14377 | NA | 0 |
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