Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 443 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-85-8070-01A | TCGA-85-8070 | KIAA1267|WHSC1L1 | KIAA1267 | WHSC1L1 | 17 | 8 | -1 | -1 | 37 | 18 | 18 | 0.084 | 44143903 | 38178690 | tier1 | Out-of-frame | 8852 | NA | 0.36493 |
| LUSC | TCGA-33-6738-01A | TCGA-33-6738 | LSM1|WHSC1L1 | LSM1 | WHSC1L1 | 8 | 8 | -1 | -1 | 11 | 8 | 6 | 0.063 | 38033793 | 38196125 | tier1 | Out-of-frame | 9628 | NA | 0.36283 |
| SKCM | TCGA-GF-A769-01A | TCGA-GF-A769 | MTSS1|WHSC1L1 | MTSS1 | WHSC1L1 | 8 | 8 | -1 | -1 | 41 | 51 | 45 | 0.96 | 125711767 | 38205733 | tier1 | CDS-5UTR | 10845 | NA | 0.36577 |
| LGG | TCGA-DH-A669-01A | TCGA-DH-A669 | ACTB|PMP2 | ACTB | PMP2 | 7 | 8 | -1 | -1 | 2 | 2 | 1 | 0.86 | 5567255 | 82359674 | tier3 | 3UTR-5UTR | 346 | non-validated | 0.37501 |
| ESCA | TCGA-RE-A7BO-01A | TCGA-RE-A7BO | NBN|SLC26A7 | NBN | SLC26A7 | 8 | 8 | -1 | 1 | 2 | 2 | 2 | 0.25 | 90994950 | 92406025 | tier3 | In-frame | 11132 | NA | 0.37402 |
| KIRC | TCGA-B0-5713-01A | TCGA-B0-5713 | LRIG1|SLC26A7 | LRIG1 | SLC26A7 | 3 | 8 | -1 | 1 | 5 | 2 | 2 | 0.99 | 66444464 | 92261767 | tier1 | CDS-5UTR | 9497 | NA | 0.34875 |
| LUSC | TCGA-77-7138-01A | TCGA-77-7138 | UBAP2|SLC26A7 | UBAP2 | SLC26A7 | 9 | 8 | -1 | 1 | 4 | 4 | 4 | 0.066 | 33960824 | 92301364 | tier1 | Out-of-frame | 19046 | NA | 0 |
| LUAD | TCGA-78-7153-01A | TCGA-78-7153 | TRAPPC9|PSKH2 | TRAPPC9 | PSKH2 | 8 | 8 | -1 | -1 | 15 | 7 | 7 | 2.5 | 141231558 | 87060996 | tier1 | In-frame | 18584 | NA | 0 |
| SARC | TCGA-K1-A6RT-01A | TCGA-K1-A6RT | PPP6R3|ATP6V0D2 | PPP6R3 | ATP6V0D2 | 11 | 8 | 1 | 1 | 5 | 4 | 4 | 0.037 | 68228295 | 87100629 | tier1 | NA | 13456 | NA | 0.33017 |
| COAD | TCGA-AY-6196-01A | TCGA-AY-6196 | C14orf37|RSPO2 | C14orf37 | RSPO2 | 14 | 8 | -1 | -1 | 3 | 4 | 2 | 0.21 | 58764673 | 109095035 | tier1 | 5UTR-5UTR | 2460 | NA | 0 |
| LUSC | TCGA-60-2706-01A | TCGA-60-2706 | RBM12B|RSPO2 | RBM12B | RSPO2 | 8 | 8 | -1 | -1 | 16 | 7 | 7 | 0.019 | 94752857 | 109001472 | tier1 | NA | 14443 | NA | 0 |
| HNSC | TCGA-QK-A8ZA-01A | TCGA-QK-A8ZA | PRRC2B|UHRF2 | PRRC2B | UHRF2 | 9 | 9 | 1 | 1 | 8 | 8 | 8 | 0.032 | 134269650 | 6475391 | tier1 | 5UTR-CDS | 13648 | NA | 0.3561 |
| KIRC | TCGA-BP-4983-01A | TCGA-BP-4983 | KANK1|UHRF2 | KANK1 | UHRF2 | 9 | 9 | 1 | 1 | 9 | 15 | 15 | 0.24 | 540667 | 6420912 | tier1 | 5UTR-CDS | 8519 | NA | 0.36586 |
| BRCA | TCGA-EW-A6S9-01A | TCGA-EW-A6S9 | MPDZ|PLIN2 | MPDZ | PLIN2 | 9 | 9 | -1 | -1 | 2 | 4 | 3 | 0.15 | 13125215 | 19131269 | tier2 | NA | 10594 | NA | 0.36092 |
| KIRC | TCGA-B0-4821-01A | TCGA-B0-4821 | HAUS6|PLIN2 | HAUS6 | PLIN2 | 9 | 9 | -1 | -1 | 2 | 2 | 2 | 0.13 | 19070217 | 19131269 | tier3 | NA | 7593 | NA | 0 |
| LGG | TCGA-E1-A7Z2-01A | TCGA-E1-A7Z2 | MPDZ|PLIN2 | MPDZ | PLIN2 | 9 | 9 | -1 | -1 | 4 | 2 | 2 | 0.15 | 13188783 | 19131269 | tier1 | NA | 10593 | NA | 0.36092 |
| HNSC | TCGA-BB-4223-01A | TCGA-BB-4223 | PAN3|NTRK2 | PAN3 | NTRK2 | 13 | 9 | 1 | 1 | 4 | 8 | 8 | 1.5 | 28713224 | 87549077 | tier1 | 5UTR-CDS | 12235 | NA | 0.38477 |
| LGG | TCGA-HT-7680-01A | TCGA-HT-7680 | AFAP1|NTRK2 | AFAP1 | NTRK2 | 4 | 9 | -1 | 1 | 115 | 54 | 51 | 0.015 | 7780489 | 87356807 | tier1 | In-frame | 574 | NA | 0.38692 |
| LGG | TCGA-DU-A76L-01A | TCGA-DU-A76L | SQSTM1|NTRK2 | SQSTM1 | NTRK2 | 5 | 9 | 1 | 1 | 12 | 17 | 13 | 0.88 | 179252226 | 87549077 | tier1 | In-frame | 16813 | NA | 0 |
| HNSC | TCGA-BA-6873-01A | TCGA-BA-6873 | FANCC|C9orf3 | FANCC | C9orf3 | 9 | 9 | -1 | 1 | 2 | 1 | 1 | 0.039 | 98002931 | 97822976 | tier4 | In-frame | 6228 | non-validated | 0 |
|
Showing page 443 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.