Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-EB-A5KH-06A | TCGA-EB-A5KH | TMEM167A|PAM | TMEM167A | PAM | 5 | 5 | -1 | 1 | 11 | 10 | 9 | 0.26 | 82357696 | 102295579 | tier1 | Out-of-frame | 17985 | NA | 0 |
| HNSC | TCGA-CR-7380-01A | TCGA-CR-7380 | KIF2A|ADAMTS19 | KIF2A | ADAMTS19 | 5 | 5 | 1 | 1 | 6 | 1 | 1 | 2.2 | 61602363 | 128956311 | tier3 | 5UTR-CDS | 8999 | NA | 0.35243 |
| PRAD | TCGA-EJ-7794-01A | TCGA-EJ-7794 | HBS1L|IL9 | HBS1L | IL9 | 6 | 5 | -1 | -1 | 127 | 66 | 62 | 0.15 | 135371720 | 135228199 | tier1 | Out-of-frame | 7602 | NA | 0.35997 |
| BRCA | TCGA-AC-A2BM-01A | TCGA-AC-A2BM | G3BP1|GLRA1 | G3BP1 | GLRA1 | 5 | 5 | 1 | -1 | 3 | 1 | 1 | 2.3 | 151151597 | 151208628 | tier3 | 5UTR-CDS | 6872 | NA | 0.37675 |
| BRCA | TCGA-A8-A0AD-01A | TCGA-A8-A0AD | BTBD9|FARS2 | BTBD9 | FARS2 | 6 | 6 | -1 | 1 | 17 | 15 | 14 | 0.046 | 38312760 | 5545413 | tier1 | In-frame | 2275 | NA | 0.35835 |
| CESC | TCGA-LP-A5U2-01A | TCGA-LP-A5U2 | LYRM4|FARS2 | LYRM4 | FARS2 | 6 | 6 | -1 | 1 | 2 | 4 | 4 | 0.028 | 5216851 | 5613402 | tier4 | In-frame | 9704 | NA | 0.34592 |
| SKCM | TCGA-WE-A8ZT-06A | TCGA-WE-A8ZT | GMDS|FARS2 | GMDS | FARS2 | 6 | 6 | -1 | 1 | 20 | 28 | 27 | 1.4 | 2116005 | 5771524 | tier1 | Out-of-frame | 7144 | NA | 0.34404 |
| SKCM | TCGA-D3-A2J9-06A | TCGA-D3-A2J9 | LYRM4|FARS2 | LYRM4 | FARS2 | 6 | 6 | -1 | 1 | 73 | 28 | 26 | 0.028 | 5260881 | 5771524 | tier1 | In-frame | 9703 | NA | 0.34592 |
| BRCA | TCGA-A8-A09N-01A | TCGA-A8-A09N | HIST1H2AC|SLC17A4 | HIST1H2AC | SLC17A4 | 6 | 6 | 1 | 1 | 26 | 22 | 17 | 0.059 | 26124977 | 25778154 | tier1 | 3UTR-CDS | 7788 | NA | 0.34792 |
| SKCM | TCGA-FS-A1ZT-06A | TCGA-FS-A1ZT | HIST1H2AC|TNFRSF21 | HIST1H2AC | TNFRSF21 | 6 | 6 | 1 | -1 | 30 | 13 | 10 | 0.72 | 26124977 | 47254331 | tier1 | 3UTR-CDS | 7789 | NA | 0.35872 |
| CHOL | TCGA-3X-AAVC-01A | TCGA-3X-AAVC | ZNF311|TTBK1 | ZNF311 | TTBK1 | 6 | 6 | -1 | 1 | 14 | 4 | 4 | 0.67 | 28966511 | 43237381 | tier1 | In-frame | 20455 | NA | 0 |
| LUAD | TCGA-44-7671-01A | TCGA-44-7671 | ZNF254|TTBK1 | ZNF254 | TTBK1 | 19 | 6 | 1 | 1 | 4 | 2 | 2 | 3.4 | 24289445 | 43250465 | tier1 | Out-of-frame | 20422 | NA | 0 |
| BRCA | TCGA-AO-A0JG-01A | TCGA-AO-A0JG | GFOD1|CYP39A1 | GFOD1 | CYP39A1 | 6 | 6 | -1 | -1 | 3 | 3 | 3 | 0.68 | 13486870 | 46610035 | tier1 | Out-of-frame | 7034 | NA | 0.34265 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | ACSS3|CYP39A1 | ACSS3 | CYP39A1 | 12 | 6 | 1 | -1 | 54 | 47 | 37 | 1.3 | 81472210 | 46518174 | tier1 | Out-of-frame | 327 | NA | 0.34453 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | PLEKHB2|GABRR1 | PLEKHB2 | GABRR1 | 2 | 6 | 1 | -1 | 19 | 35 | 33 | 0.14 | 131862971 | 89910984 | tier1 | 5UTR-CDS | 13017 | NA | 0.36618 |
| BLCA | TCGA-FD-A3SS-01A | TCGA-FD-A3SS | C6orf170|RSPO3 | C6orf170 | RSPO3 | 6 | 6 | -1 | 1 | 3 | 2 | 2 | 5.2 | 121411999 | 127469793 | tier1 | Out-of-frame | 2755 | NA | 0 |
| SARC | TCGA-3B-A9HZ-01A | TCGA-3B-A9HZ | RNF217|RSPO3 | RNF217 | RSPO3 | 6 | 6 | 1 | 1 | 28 | 13 | 10 | 0.025 | 125284572 | 127516968 | tier1 | Out-of-frame | 14832 | NA | 0 |
| LIHC | TCGA-BC-A10R-01A | TCGA-BC-A10R | VNN1|C6orf192 | VNN1 | C6orf192 | 6 | 6 | -1 | -1 | 14 | 12 | 11 | 0.26 | 133032848 | 133091475 | tier1 | In-frame | 19601 | NA | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | NUP43|SHPRH | NUP43 | SHPRH | 6 | 6 | -1 | -1 | 2 | 1 | 1 | 0.29 | 150059779 | 146216113 | tier3 | Out-of-frame | 11940 | non-validated | 0.36753 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | SMURF1|TRIM4 | SMURF1 | TRIM4 | 7 | 7 | -1 | -1 | 4 | 2 | 2 | 0.69 | 98741349 | 99507283 | tier1 | Out-of-frame | 16450 | NA | 0 |
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