Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | KDM5A|NINJ2 | KDM5A | NINJ2 | 12 | 12 | -1 | -1 | 4 | 67 | 63 | 0.011 | 430161 | 675344 | tier1 | In-frame | 8692 | NA | 0.32603 |
| LUAD | TCGA-44-A47B-01A | TCGA-44-A47B | KDM5A|RAE1 | KDM5A | RAE1 | 12 | 20 | -1 | 1 | 52 | 44 | 43 | 3.5 | 459787 | 55940412 | tier1 | In-frame | 8693 | NA | 0.36331 |
| SKCM | TCGA-D3-A1Q9-06A | TCGA-D3-A1Q9 | KDM5A|IQSEC3 | KDM5A | IQSEC3 | 12 | 12 | -1 | 1 | 29 | 13 | 12 | 0.78 | 442653 | 266191 | tier1 | Out-of-frame | 8689 | NA | 0.33824 |
| STAD | TCGA-BR-8295-01A | TCGA-BR-8295 | KDM5A|NINJ2 | KDM5A | NINJ2 | 12 | 12 | -1 | -1 | 10 | 134 | 115 | 0.011 | 404739 | 675344 | tier1 | In-frame | 8691 | NA | 0.32603 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | MAP3K13|P2RX5 | MAP3K13 | P2RX5 | 3 | 17 | 1 | -1 | 2 | 2 | 2 | 0.81 | 185081156 | 3577171 | tier2 | 5UTR-CDS | 9858 | NA | 0.36979 |
| SARC | TCGA-IF-A3RQ-01A | TCGA-IF-A3RQ | MAP3K13|FETUB | MAP3K13 | FETUB | 3 | 3 | 1 | 1 | 2 | 6 | 6 | 2 | 185003431 | 186369007 | tier2 | 5UTR-CDS | 9856 | NA | 0.36914 |
| GBM | TCGA-06-5859-01A | TCGA-06-5859 | MAP3K13|CD37 | MAP3K13 | CD37 | 3 | 19 | 1 | 1 | 5 | 31 | 27 | 0.56 | 185003431 | 49840166 | tier1 | 5UTR-CDS | 9855 | NA | 0.36887 |
| LGG | TCGA-CS-4942-01A | TCGA-CS-4942 | MAP3K13|UTS2D | MAP3K13 | UTS2D | 3 | 3 | 1 | -1 | 9 | 12 | 10 | 0.84 | 185003431 | 191046498 | tier1 | 5UTR-5UTR | 9859 | NA | 0.36812 |
| COAD | TCGA-F4-6459-01A | TCGA-F4-6459 | MAP3K13|NSUN2 | MAP3K13 | NSUN2 | 3 | 5 | 1 | -1 | 5 | 8 | 8 | 0.33 | 185046750 | 6625782 | tier1 | 5UTR-CDS | 9857 | NA | 0.36808 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | MAP3K13|VPS8 | MAP3K13 | VPS8 | 3 | 3 | 1 | 1 | 4 | 5 | 5 | 0.15 | 185081156 | 184769664 | tier1 | 5UTR-CDS | 9860 | non-validated | 0.36917 |
| LUAD | TCGA-55-6972-01A | TCGA-55-6972 | ST6GAL1|KNG1 | ST6GAL1 | KNG1 | 3 | 3 | 1 | 1 | 2 | 2 | 2 | 0.57 | 186761098 | 186461494 | tier3 | Out-of-frame | 16947 | non-validated | 0 |
| KIRP | TCGA-DZ-6131-01A | TCGA-DZ-6131 | ST6GAL1|LPP | ST6GAL1 | LPP | 3 | 3 | 1 | 1 | 28 | 15 | 13 | 0.87 | 186681714 | 188583988 | tier1 | 5UTR-CDS | 16948 | NA | 0 |
| LUSC | TCGA-34-5241-01A | TCGA-34-5241 | ST6GAL1|TBCCD1 | ST6GAL1 | TBCCD1 | 3 | 3 | 1 | -1 | 8 | 7 | 7 | 0.51 | 186681714 | 186282161 | tier1 | 5UTR-5UTR | 16950 | NA | 0 |
| PRAD | TCGA-J4-A67R-01A | TCGA-J4-A67R | ST6GAL1|PSMC3 | ST6GAL1 | PSMC3 | 3 | 11 | 1 | -1 | 29 | 17 | 15 | 0.25 | 186681714 | 47447501 | tier1 | 5UTR-CDS | 16949 | NA | 0 |
| SARC | TCGA-DX-AB2O-01A | TCGA-DX-AB2O | GLI2|MARCO | GLI2 | MARCO | 2 | 2 | 1 | 1 | 6 | 6 | 6 | 0.13 | 121555044 | 119726736 | tier1 | In-frame | 7097 | NA | 0.37351 |
| SARC | TCGA-DX-A6YV-01A | TCGA-DX-A6YV | GLI2|SPOP | GLI2 | SPOP | 2 | 17 | 1 | -1 | 76 | 65 | 58 | 0.21 | 121685042 | 47700238 | tier1 | CDS-5UTR | 7098 | NA | 0.37837 |
| BRCA | TCGA-B6-A402-01A | TCGA-B6-A402 | NOTCH3|C3 | NOTCH3 | C3 | 19 | 19 | -1 | -1 | 2 | 1 | 1 | 0.42 | 15270445 | 6720693 | tier2 | 3UTR-5UTR | 11672 | NA | 0.37754 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | NOTCH3|CACNA1A | NOTCH3 | CACNA1A | 19 | 19 | -1 | -1 | 2 | 6 | 6 | 0.059 | 15308311 | 13482593 | tier2 | In-frame | 11673 | NA | 0.37627 |
| CESC | TCGA-HM-A6W2-01A | TCGA-HM-A6W2 | NOTCH3|BRD4 | NOTCH3 | BRD4 | 19 | 19 | -1 | -1 | 17 | 9 | 8 | 0.01 | 15308311 | 15360101 | tier1 | Out-of-frame | 11671 | NA | 0.37741 |
| UCEC | TCGA-B5-A0JN-01A | TCGA-B5-A0JN | NOTCH3|BRD4 | NOTCH3 | BRD4 | 19 | 19 | -1 | -1 | 3 | 3 | 3 | 0.01 | 15299800 | 15360101 | tier1 | In-frame | 11670 | non-validated | 0.37741 |
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