Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 439 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-CS-4941-01A | TCGA-CS-4941 | FHIT|PTPRG | FHIT | PTPRG | 3 | 3 | -1 | 1 | 3 | 1 | 1 | 0.043 | 61236975 | 61734552 | tier2 | 5UTR-CDS | 6524 | NA | 0.36774 |
| COAD | TCGA-AD-6899-01A | TCGA-AD-6899 | RAD54L2|SLC25A26 | RAD54L2 | SLC25A26 | 3 | 3 | 1 | 1 | 2 | 4 | 1 | 0.65 | 51669805 | 66312475 | tier2 | Out-of-frame | 14180 | NA | 0 |
| SKCM | TCGA-FS-A1ZZ-06A | TCGA-FS-A1ZZ | ATXN7|SLC25A26 | ATXN7 | SLC25A26 | 3 | 3 | 1 | 1 | 10 | 5 | 5 | 0.29 | 63938159 | 66271168 | tier1 | CDS-5UTR | 1817 | NA | 0.36357 |
| UCS | TCGA-NA-A4QW-01A | TCGA-NA-A4QW | ATXN7|SLC25A26 | ATXN7 | SLC25A26 | 3 | 3 | 1 | 1 | 62 | 32 | 25 | 0.29 | 63938159 | 66293627 | tier1 | In-frame | 1818 | NA | 0.36357 |
| SKCM | TCGA-EE-A2M6-06A | TCGA-EE-A2M6 | NMNAT3|PLA1A | NMNAT3 | PLA1A | 3 | 3 | -1 | 1 | 3 | 2 | 2 | 1.9 | 139346458 | 119336866 | tier1 | In-frame | 11621 | NA | 0.34239 |
| SKCM | TCGA-YD-A9TA-06A | TCGA-YD-A9TA | LSAMP|IGSF11 | LSAMP | IGSF11 | 3 | 3 | -1 | -1 | 2 | 2 | 2 | 0.063 | 117716029 | 118624565 | tier2 | In-frame | 9627 | NA | 0.35037 |
| SARC | TCGA-SI-A71Q-01A | TCGA-SI-A71Q | ZNF699|NR1I2 | ZNF699 | NR1I2 | 19 | 3 | -1 | 1 | 2 | 2 | 2 | 0.14 | 9407972 | 119526076 | tier2 | In-frame | 20628 | NA | 0 |
| LUSC | TCGA-92-8063-01A | TCGA-92-8063 | NF1|AGTR1 | NF1 | AGTR1 | 17 | 3 | 1 | 1 | 7 | 9 | 6 | 0.088 | 29662049 | 148425731 | tier1 | CDS-5UTR | 11396 | NA | 0.38336 |
| BRCA | TCGA-AC-A2FF-01A | TCGA-AC-A2FF | TMCC1|ALDH1L1 | TMCC1 | ALDH1L1 | 3 | 3 | -1 | -1 | 5 | 1 | 1 | 2.4 | 129546646 | 125879845 | tier3 | Out-of-frame | 17895 | NA | 0 |
| KIRC | TCGA-CJ-4886-01A | TCGA-CJ-4886 | APC|ALDH1L1 | APC | ALDH1L1 | 5 | 3 | 1 | -1 | 38 | 32 | 30 | 0.11 | 112043579 | 125879845 | tier1 | 5UTR-CDS | 1108 | NA | 0.37676 |
| LGG | TCGA-HT-7858-01A | TCGA-HT-7858 | CNBP|ALDH1L1 | CNBP | ALDH1L1 | 3 | 3 | -1 | -1 | 29 | 12 | 10 | 0.67 | 128902619 | 125831723 | tier1 | 5UTR-CDS | 3903 | NA | 0.34672 |
| BRCA | TCGA-EW-A1PB-01A | TCGA-EW-A1PB | IGF2BP2|NCEH1 | IGF2BP2 | NCEH1 | 3 | 3 | -1 | -1 | 2 | 6 | 6 | 0.62 | 185540941 | 172365904 | tier2 | Out-of-frame | 8107 | non-validated | 0.35027 |
| ESCA | TCGA-L5-A88S-01A | TCGA-L5-A88S | PHC3|NCEH1 | PHC3 | NCEH1 | 3 | 3 | -1 | -1 | 5 | 22 | 17 | 0.24 | 169831148 | 172365904 | tier1 | Out-of-frame | 12692 | NA | 0.34731 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | GOLIM4|NCEH1 | GOLIM4 | NCEH1 | 3 | 3 | -1 | -1 | 2 | 3 | 3 | 0.017 | 167812887 | 172365904 | tier2 | Out-of-frame | 7276 | non-validated | 0.32787 |
| UCS | TCGA-NF-A5CP-01A | TCGA-NF-A5CP | ZNF423|NCEH1 | ZNF423 | NCEH1 | 16 | 3 | -1 | -1 | 2 | 9 | 9 | 2.8 | 49823398 | 172351882 | tier2 | Out-of-frame | 20494 | NA | 0 |
| LUSC | TCGA-33-AASB-01A | TCGA-33-AASB | GNL3|MANF | GNL3 | MANF | 3 | 3 | 1 | 1 | 30 | 30 | 29 | 0.29 | 52720121 | 51423639 | tier1 | In-frame | 7243 | NA | 0.35306 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | C7orf46|MUC4 | C7orf46 | MUC4 | 7 | 3 | 1 | -1 | 2 | 3 | 3 | 3.1 | 23729078 | 195481243 | tier4 | Out-of-frame | 2792 | NA | 0 |
| LIHC | TCGA-2Y-A9H7-01A | TCGA-2Y-A9H7 | ACTB|AHSG | ACTB | AHSG | 7 | 3 | -1 | 1 | 2 | 1 | 1 | 1.4 | 5567255 | 186330855 | tier3 | 3UTR-5UTR | 332 | NA | 0.37573 |
| BRCA | TCGA-C8-A132-01A | TCGA-C8-A132 | PSMD2|ECE2 | PSMD2 | ECE2 | 3 | 3 | 1 | 1 | 44 | 36 | 35 | 0.003 | 184022179 | 184005625 | tier1 | In-frame | 13729 | NA | 0.36035 |
| GBM | TCGA-06-0644-01A | TCGA-06-0644 | DCTD|ECE2 | DCTD | ECE2 | 4 | 3 | -1 | 1 | 10 | 25 | 23 | 0.24 | 183836076 | 184001573 | tier1 | Out-of-frame | 4610 | NA | 0.35649 |
|
Showing page 439 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.