TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BRCA	TCGA-BH-A18V-06A	TCGA-BH-A18V	DTNB\|ASXL2	DTNB	ASXL2	2	2	-1	-1	2	4	4	0.79	25818955	25973282	tier2	Out-of-frame	5158	NA	0.36495
ESCA	TCGA-L5-A8NE-01A	TCGA-L5-A8NE	DTNB\|ASXL2	DTNB	ASXL2	2	2	-1	-1	3	14	12	0.79	25818955	25991737	tier1	In-frame	5160	validated	0.36495
STAD	TCGA-BR-4357-01A	TCGA-BR-4357	DTNB\|ASXL2	DTNB	ASXL2	2	2	-1	-1	2	3	3	0.79	25754342	25994409	tier2	Out-of-frame	5159	NA	0.36495
SARC	TCGA-MB-A8JL-01A	TCGA-MB-A8JL	RBMS1\|SLC20A1	RBMS1	SLC20A1	2	2	-1	1	31	8	6	0.15	161349800	113420441	tier1	In-frame	14492	NA	0
SKCM	TCGA-ER-A197-06A	TCGA-ER-A197	TJP1\|SLC20A1	TJP1	SLC20A1	15	2	-1	1	29	11	8	0.96	30114205	113405230	tier1	Out-of-frame	17839	NA	0
CESC	TCGA-EA-A1QS-01A	TCGA-EA-A1QS	EIF5B\|LYG1	EIF5B	LYG1	2	2	1	-1	8	7	6	0.6	99954052	99912165	tier1	CDS-5UTR	5485	NA	0.36124
BRCA	TCGA-BH-A0C7-01B	TCGA-BH-A0C7	TRIP12\|SLC4A10	TRIP12	SLC4A10	2	2	-1	1	57	23	17	0.38	230701564	162820645	tier1	Out-of-frame	18691	NA	0
PRAD	TCGA-V1-A9O5-06A	TCGA-V1-A9O5	RPLP1\|TMEFF2	RPLP1	TMEFF2	15	2	1	-1	2	1	1	1.2	69748172	193059642	tier4	3UTR-5UTR	15009	NA	0
BLCA	TCGA-FJ-A3ZF-01A	TCGA-FJ-A3ZF	SF3B1\|HSPD1	SF3B1	HSPD1	2	2	-1	-1	5	17	14	0.11	198274494	198355020	tier1	Out-of-frame	15726	NA	0
SARC	TCGA-FX-A3NK-01A	TCGA-FX-A3NK	DNM2\|PTH2R	DNM2	PTH2R	19	2	1	1	4	12	10	0.55	10829079	209292926	tier1	Out-of-frame	4980	NA	0.37908
STAD	TCGA-CD-8533-01A	TCGA-CD-8533	PARD3B\|PTH2R	PARD3B	PTH2R	2	2	1	1	2	2	2	0.23	205551005	209357989	tier2	In-frame	12280	NA	0.37092
ESCA	TCGA-VR-A8EU-01A	TCGA-VR-A8EU	SGPP2\|ABCA12	SGPP2	ABCA12	2	2	1	-1	2	5	4	3.8	223289540	215882856	tier4	Out-of-frame	15788	NA	0
PRAD	TCGA-EJ-7784-01A	TCGA-EJ-7784	PAPOLG\|ABCA12	PAPOLG	ABCA12	2	2	1	-1	2	1	1	0.16	60997646	215821502	tier2	In-frame	12257	NA	0.34719
SARC	TCGA-DX-A8BX-01A	TCGA-DX-A8BX	CAB39\|RHBDD1	CAB39	RHBDD1	2	2	1	1	40	19	16	0.2	231624830	227860147	tier1	Out-of-frame	2837	NA	0.3558
LUAD	TCGA-05-4398-01A	TCGA-05-4398	STAT4\|CXCR7	STAT4	CXCR7	2	2	-1	1	103	62	53	0.22	192011339	237489083	tier1	CDS-5UTR	17016	non-validated	0
CESC	TCGA-HM-A3JJ-01A	TCGA-HM-A3JJ	ABLIM3\|TRPM8	ABLIM3	TRPM8	5	2	1	1	5	5	1	0.92	148521671	234835178	tier2	CDS-5UTR	120	NA	0.35586
GBM	TCGA-14-0790-01B	TCGA-14-0790	DYNC1LI1\|GADL1	DYNC1LI1	GADL1	3	3	-1	-1	2	2	2	0.12	32611838	30903257	tier2	In-frame	5214	NA	0.3559
BRCA	TCGA-AN-A0AR-01A	TCGA-AN-A0AR	XYLB\|ITGA9	XYLB	ITGA9	3	3	1	1	2	4	4	0.3	38390123	37695205	tier2	Out-of-frame	20004	NA	0
KICH	TCGA-KL-8339-01A	TCGA-KL-8339	CTDSPL\|ITGA9	CTDSPL	ITGA9	3	3	1	1	6	10	10	0.37	37903769	37774203	tier1	Out-of-frame	4331	NA	0.36998
BRCA	TCGA-BH-A0HY-01A	TCGA-BH-A0HY	KIAA0564\|PTPRG	KIAA0564	PTPRG	13	3	-1	1	2	1	1	0.19	42481722	61975299	tier2	Out-of-frame	8797	NA	0.36116

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