Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-K4-A5RH-01A | TCGA-K4-A5RH | ARHGEF2|S100A7 | ARHGEF2 | S100A7 | 1 | 1 | -1 | -1 | 419 | 292 | 267 | 100 | 155948156 | 153431506 | tier1 | CDS-5UTR | 1315 | NA | 0.37795 |
| PRAD | TCGA-2A-A8W3-01A | TCGA-2A-A8W3 | GATAD2B|KCNN3 | GATAD2B | KCNN3 | 1 | 1 | -1 | -1 | 40 | 17 | 17 | 0.23 | 153895209 | 154744869 | tier1 | 5UTR-CDS | 6983 | NA | 0.36605 |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | GATAD2B|KCNN3 | GATAD2B | KCNN3 | 1 | 1 | -1 | -1 | 2 | 5 | 5 | 0.23 | 153895209 | 154744869 | tier2 | 5UTR-CDS | 6984 | NA | 0.36605 |
| SARC | TCGA-DX-A7EU-01A | TCGA-DX-A7EU | DYNC2LI1|KCNN3 | DYNC2LI1 | KCNN3 | 2 | 1 | 1 | -1 | 6 | 2 | 2 | 3.7 | 44010693 | 154698502 | tier1 | Out-of-frame | 5221 | NA | 0.34411 |
| BRCA | TCGA-AN-A04D-01A | TCGA-AN-A04D | NFASC|RP5-862P8.2 | NFASC | RP5-862P8.2 | 1 | 1 | 1 | 1 | 2 | 3 | 2 | 2.2 | 204926954 | 233507784 | tier3 | In-frame | 11431 | non-validated | 0.36203 |
| BRCA | TCGA-AR-A0TS-01A | TCGA-AR-A0TS | USP13|RP5-862P8.2 | USP13 | RP5-862P8.2 | 3 | 1 | 1 | 1 | 6 | 8 | 7 | 1.7 | 179371181 | 233518051 | tier1 | Out-of-frame | 19310 | NA | 0 |
| BRCA | TCGA-AO-A0J2-01A | TCGA-AO-A0J2 | ZC3HAV1|ITPKB | ZC3HAV1 | ITPKB | 7 | 1 | -1 | -1 | 5 | 5 | 5 | 0.45 | 138749625 | 226836472 | tier1 | Out-of-frame | 20159 | validated | 0 |
| LUAD | TCGA-49-AAR9-01A | TCGA-49-AAR9 | ASAP2|MBOAT2 | ASAP2 | MBOAT2 | 2 | 2 | 1 | -1 | 24 | 40 | 39 | 0.45 | 9437574 | 9098771 | tier1 | In-frame | 1487 | NA | 0.37818 |
| UCEC | TCGA-AX-A3G3-01A | TCGA-AX-A3G3 | C2orf43|MBOAT2 | C2orf43 | MBOAT2 | 2 | 2 | -1 | -1 | 8 | 1 | 1 | 0.23 | 20990015 | 9022695 | tier3 | In-frame | 2687 | NA | 0 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | FRS2|PARP1 | FRS2 | PARP1 | 12 | 1 | 1 | -1 | 347 | 247 | 207 | 0.97 | 69864310 | 226558218 | tier1 | 5UTR-CDS | 6773 | NA | 0.38681 |
| UVM | TCGA-VD-A8KO-01A | TCGA-VD-A8KO | MACROD1|PARP1 | MACROD1 | PARP1 | 11 | 1 | -1 | -1 | 4 | 4 | 4 | 0.17 | 63918711 | 226590080 | tier1 | Out-of-frame | 9739 | NA | 0.37647 |
| SARC | TCGA-DX-AB2H-01A | TCGA-DX-AB2H | B3GALNT2|LBR | B3GALNT2 | LBR | 1 | 1 | -1 | -1 | 12 | 9 | 9 | 0.65 | 235634164 | 225611791 | tier1 | CDS-5UTR | 1849 | NA | 0.36145 |
| ACC | TCGA-OR-A5JY-01A | TCGA-OR-A5JY | DHCR24|EPHX1 | DHCR24 | EPHX1 | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 0.93 | 55315306 | 225997794 | tier2 | NA | 4770 | NA | 0.35433 |
| ACC | TCGA-OR-A5K2-01A | TCGA-OR-A5K2 | DHCR24|EPHX1 | DHCR24 | EPHX1 | 1 | 1 | -1 | 1 | 2 | 13 | 1 | 0.93 | 55315306 | 225997794 | tier3 | NA | 4771 | NA | 0.35433 |
| ACC | TCGA-OR-A5LH-01A | TCGA-OR-A5LH | DHCR24|EPHX1 | DHCR24 | EPHX1 | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 0.93 | 55315306 | 225997794 | tier3 | NA | 4772 | NA | 0.35433 |
| LIHC | TCGA-EP-A3JL-01A | TCGA-EP-A3JL | DHCR24|EPHX1 | DHCR24 | EPHX1 | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 0.93 | 55315306 | 225997794 | tier3 | NA | 4768 | NA | 0.35433 |
| LIHC | TCGA-G3-A25Z-01A | TCGA-G3-A25Z | DHCR24|EPHX1 | DHCR24 | EPHX1 | 1 | 1 | -1 | 1 | 2 | 7 | 1 | 0.93 | 55315306 | 225997794 | tier3 | NA | 4769 | NA | 0.35433 |
| LIHC | TCGA-UB-A7MA-01A | TCGA-UB-A7MA | ETNK2|REN | ETNK2 | REN | 1 | 1 | -1 | -1 | 2 | 1 | 1 | 1.6 | 204110443 | 204131291 | tier2 | Out-of-frame | 5855 | NA | 0.35212 |
| OV | TCGA-24-2024-01A | TCGA-24-2024 | PIAS3|REN | PIAS3 | REN | 1 | 1 | 1 | -1 | 3 | 27 | 25 | 0.52 | 145575404 | 204131291 | tier1 | 5UTR-CDS | 12794 | non-validated | 0.36846 |
| UCEC | TCGA-B5-A3FD-01A | TCGA-B5-A3FD | CTNNA2|REG3G | CTNNA2 | REG3G | 2 | 2 | 1 | 1 | 35 | 36 | 33 | 1.7 | 79878784 | 79253109 | tier1 | CDS-5UTR | 4353 | NA | 0.34924 |
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