Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A8FY-01A | TCGA-BH-A8FY | ARHGEF11|ALDH9A1 | ARHGEF11 | ALDH9A1 | 1 | 1 | -1 | -1 | 13 | 6 | 6 | 0.016 | 157014091 | 165664634 | tier2 | Out-of-frame | 1288 | NA | 0.37466 |
| LUSC | TCGA-85-8354-01A | TCGA-85-8354 | GRIP1|XCL1 | GRIP1 | XCL1 | 12 | 1 | -1 | 1 | 2 | 2 | 2 | 3.1 | 66932858 | 168550290 | tier2 | Out-of-frame | 7462 | NA | 0.37158 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | RAP1B|DPT | RAP1B | DPT | 12 | 1 | 1 | -1 | 127 | 195 | 172 | 0.47 | 69004823 | 168683584 | tier1 | 5UTR-CDS | 14272 | non-validated | 0 |
| BRCA | TCGA-AR-A0TT-01A | TCGA-AR-A0TT | EFNA3|USP21 | EFNA3 | USP21 | 1 | 1 | 1 | 1 | 27 | 3 | 3 | 0.52 | 155058681 | 161130410 | tier1 | CDS-5UTR | 5354 | NA | 0.36371 |
| LGG | TCGA-DU-6542-01A | TCGA-DU-6542 | KIF21B|F13B | KIF21B | F13B | 1 | 1 | -1 | -1 | 4 | 2 | 2 | 0.78 | 200992471 | 197032187 | tier1 | Out-of-frame | 8978 | NA | 0.36548 |
| LGG | TCGA-DU-6542-01A | TCGA-DU-6542 | TMCC2|HMCN1 | TMCC2 | HMCN1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2.4 | 205197899 | 185931650 | tier2 | Out-of-frame | 17899 | NA | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | DCAF6|HMCN1 | DCAF6 | HMCN1 | 1 | 1 | 1 | 1 | 43 | 32 | 26 | 2.2 | 168014465 | 185815158 | tier1 | Out-of-frame | 4578 | non-validated | 0.34108 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | TMEM2|HMCN1 | TMEM2 | HMCN1 | 9 | 1 | -1 | 1 | 8 | 8 | 7 | 0.1 | 74309425 | 185878469 | tier1 | In-frame | 18006 | NA | 0 |
| SKCM | TCGA-BF-A1Q0-01A | TCGA-BF-A1Q0 | RGL1|HMCN1 | RGL1 | HMCN1 | 1 | 1 | 1 | 1 | 5 | 18 | 18 | 0.27 | 183775619 | 185815158 | tier1 | Out-of-frame | 14624 | NA | 0 |
| SKCM | TCGA-ER-A3EV-06A | TCGA-ER-A3EV | ROBO1|HMCN1 | ROBO1 | HMCN1 | 3 | 1 | -1 | 1 | 8 | 2 | 2 | 0.033 | 78987751 | 185966561 | tier1 | In-frame | 14866 | NA | 0 |
| LUAD | TCGA-NJ-A4YF-01A | TCGA-NJ-A4YF | VPS72|RORC | VPS72 | RORC | 1 | 1 | -1 | -1 | 6 | 4 | 4 | 0.16 | 151162481 | 151789756 | tier1 | Out-of-frame | 19672 | NA | 0 |
| BLCA | TCGA-FD-A5BS-01A | TCGA-FD-A5BS | CERS2|SETDB1 | CERS2 | SETDB1 | 1 | 1 | -1 | 1 | 3 | 1 | 1 | 1.4 | 150940140 | 150919362 | tier3 | In-frame | 3572 | NA | 0.36603 |
| OV | TCGA-61-1918-01A | TCGA-61-1918 | ANP32E|CTSK | ANP32E | CTSK | 1 | 1 | -1 | -1 | 2 | 8 | 7 | 2.5 | 150202906 | 150769374 | tier2 | Out-of-frame | 1041 | NA | 0.36269 |
| UCEC | TCGA-AX-A3G3-01A | TCGA-AX-A3G3 | PPP1CB|PI4KB | PPP1CB | PI4KB | 2 | 1 | 1 | -1 | 13 | 5 | 5 | 0.69 | 28975042 | 151280277 | tier1 | Out-of-frame | 13339 | NA | 0.37532 |
| UCEC | TCGA-AX-A3G3-01A | TCGA-AX-A3G3 | PRUNE|PI4KB | PRUNE | PI4KB | 1 | 1 | 1 | -1 | 14 | 13 | 9 | 1.5 | 150998149 | 151280277 | tier1 | Out-of-frame | 13667 | NA | 0.36044 |
| BRCA | TCGA-OL-A5D8-01A | TCGA-OL-A5D8 | RRNAD1|ARNT | RRNAD1 | ARNT | 1 | 1 | 1 | -1 | 23 | 8 | 7 | 0.11 | 156699007 | 150790506 | tier1 | Out-of-frame | 15134 | NA | 0 |
| LIHC | TCGA-GJ-A6C0-01A | TCGA-GJ-A6C0 | GOLPH3L|ARNT | GOLPH3L | ARNT | 1 | 1 | -1 | -1 | 3 | 1 | 1 | 2 | 150667132 | 150790506 | tier2 | Out-of-frame | 7283 | NA | 0.37137 |
| BRCA | TCGA-B6-A0X1-01A | TCGA-B6-A0X1 | ASAP1|KCNH1 | ASAP1 | KCNH1 | 8 | 1 | -1 | -1 | 6 | 7 | 7 | 0.67 | 131088594 | 210977508 | tier1 | In-frame | 1480 | NA | 0.37891 |
| BRCA | TCGA-AR-A24Z-01A | TCGA-AR-A24Z | PLXNA2|DUSP10 | PLXNA2 | DUSP10 | 1 | 1 | -1 | -1 | 5 | 2 | 1 | 1.1 | 208383625 | 221879808 | tier2 | Out-of-frame | 13065 | non-validated | 0.37938 |
| SKCM | TCGA-QB-AA9O-06A | TCGA-QB-AA9O | ANAPC5|ADAM15 | ANAPC5 | ADAM15 | 12 | 1 | -1 | 1 | 187 | 177 | 161 | 3.2 | 121783642 | 155034721 | tier1 | Out-of-frame | 889 | NA | 0.37815 |
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